View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19602_high_20 (Length: 353)
Name: NF19602_high_20
Description: NF19602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19602_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 21 - 334
Target Start/End: Original strand, 31824815 - 31825128
Alignment:
| Q |
21 |
aacatcctcttcgtcttaaccctcccacccggtcgatccctaccttccaaaatacaaactttaaaccctaaaaacactaattgtcgcgcggcaaccaacc |
120 |
Q |
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| T |
31824815 |
aacatcctcttcgtcttaaccctcccacccggtcgatccctaccttccaaaatacaaactttaaaccctaaaaacactaattgtcgcgcggcaaccaacc |
31824914 |
T |
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| Q |
121 |
ccgccaacccggcaccaataacaatcacactccctctctcaattccatcaaaagaactatttttcttcgctttaatctccggtgaaacaccgaaattaat |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31824915 |
ccgccaacccggcaccaataacaatcacactccctctctcaattccatcaaaagaactatttttcttcgctttaatctccggtgaaacaccgaaattaat |
31825014 |
T |
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| Q |
221 |
ataaccatgctcaatcaaaaacctataagcaacatcaaccaaacccttatgttccgaccgaatcgacttcaccgccttatcataagtcaaccaaacattc |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
31825015 |
ataaccatgctcaatcaaaaacctataagcaacatcaaccaaacccttatgttcggatcgaatcgacttcaccgccttatcataagtcaaccaaacattc |
31825114 |
T |
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| Q |
321 |
acatccgatcgcca |
334 |
Q |
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|||||||||||||| |
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| T |
31825115 |
acatccgatcgcca |
31825128 |
T |
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