View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19602_high_27 (Length: 298)
Name: NF19602_high_27
Description: NF19602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19602_high_27 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 30016496 - 30016230
Alignment:
| Q |
18 |
acctcatcattttccaccactatttttagcattggctaccaccattaaaataaatatgatattatctatatctctacaaatataacctctannnnnnnac |
117 |
Q |
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| T |
30016496 |
acctcatcattttccaccactatttttagcattggctaccaccattaaaataaatatgatattatctatatctctacaaatataacctctatttttttac |
30016397 |
T |
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| Q |
118 |
ccagattaggtttattaatttgtcttatttcattgttactattttactcttaatttgttacaaagtttccctacatcttatagtcaattattttcggttt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
30016396 |
tcagattaggtttattaatttgtcttatttcattgttactattttactcttaatttgttacaaagtttccctacatcttatagtaaattgttttcggttt |
30016297 |
T |
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| Q |
218 |
tattagttaaattataatcaattaaaattcatagataagatatatattgactggataatcttttata |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
30016296 |
tattagttaaattataatcaattaaaattcatagataagatatatattgattggataatcttttata |
30016230 |
T |
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