View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19602_high_34 (Length: 276)
Name: NF19602_high_34
Description: NF19602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19602_high_34 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 127 - 259
Target Start/End: Complemental strand, 10201432 - 10201300
Alignment:
| Q |
127 |
gcacatatattaacaaccatcacatcaagaagcaacttaacgcaaatttttgtcaatcaaacctgacatgttacctccaccaccaaaatttattattatc |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10201432 |
gcacatatattaacaaccatcacatcaagaagcaacttaacgcaaatttttgtcaatcaaacctgacatgttacctccaccaccaaaatttattattatc |
10201333 |
T |
|
| Q |
227 |
ccaaacttttttcattttcattatcacagaatc |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
10201332 |
ccaaacttttttcattttcattatcacagaatc |
10201300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 10201543 - 10201499
Alignment:
| Q |
16 |
agagaagaaatcagaatgagatttgtggtgataacgtggaccaat |
60 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10201543 |
agagaagaaatcagaatgagatttgtggtgataacgtggaccaat |
10201499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University