View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19602_high_4 (Length: 524)
Name: NF19602_high_4
Description: NF19602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19602_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 13 - 511
Target Start/End: Complemental strand, 5027476 - 5026978
Alignment:
| Q |
13 |
aatatcataactcaccaatttcacatcaccaccatgatcaacgtaaaaaaccggattcccagtaacaaacggattcataggtatataacaatgccgaaag |
112 |
Q |
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||||||||||| ||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5027476 |
aatatcataacccaccaatctcacatcaccactatgatcaacgtaaaataccggattcccagtaacaaacggattcataggtatataacaatgccgaaag |
5027377 |
T |
|
| Q |
113 |
atcggaactaactgcggcgcagagtccaaaatcctctgcgccgcggttagcttatctttcgggattggaccccatgaaggatgccagaaactattatttt |
212 |
Q |
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||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5027376 |
atcggaactaactgcggtgcagggtccaaaatcctctgcgccgcggttagcttatctttcgggattggaccccatgaaggatgccagaaactattatttt |
5027277 |
T |
|
| Q |
213 |
taacgcggcggataatggaagagaatggaatgttgagaagaatttgaagctgttgatgagatgatgaacgccaattaggaaaacccggtgaaactggaag |
312 |
Q |
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|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
5027276 |
taacgcggcggagaatggaagagactggaatgttgagaagaatttgaagctgttgatgagatgatgaacgccaattaggaaaacccggtgacactggaag |
5027177 |
T |
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| Q |
313 |
accttgttggagaatagcatgaagatcaggtgggaatttaaggttgaattttgattcgagatgttgaaattctgattcggtgagtccttgttcgataata |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5027176 |
accttgttggagaatagcatgaagatcaggtgggaatttaaggttgaattttgattcgagatgttgaaattctgattcggtgagtccttgttcgataata |
5027077 |
T |
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| Q |
413 |
atgttggaggatttgaggttttgtatgagattgtttgcataagttgtgaatgagaaacatattcttcgtttcttgggtctaagtggtggttttgttttt |
511 |
Q |
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||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5027076 |
atgttagaggatttgaggttttgtatgagatcgtttgcatatgttgtgaatgagaaacatattcttcgtttcttgggtctaagtggtggttttgttttt |
5026978 |
T |
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