View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19602_high_51 (Length: 220)

Name: NF19602_high_51
Description: NF19602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19602_high_51
NF19602_high_51
[»] chr6 (2 HSPs)
chr6 (1-220)||(18077124-18077343)
chr6 (102-215)||(18079034-18079146)
[»] chr1 (5 HSPs)
chr1 (92-220)||(51474435-51474563)
chr1 (92-220)||(51478635-51478763)
chr1 (14-72)||(51474610-51474668)
chr1 (158-204)||(51454469-51454515)
chr1 (22-66)||(51468115-51468159)


Alignment Details
Target: chr6 (Bit Score: 164; Significance: 8e-88; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 18077343 - 18077124
Alignment:
Q  1 taaacctaaattgacatcaagaaaaatgagcaaattcaaatgactagatcctggtgatgaaattccactctaaagttccnnnnnnnnnnnnctaccagca 100  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||    
T  18077343 taaacctaaatgtacatcaagaaaaatgagcaaattcaaatgactagatcctggtgatgaaattccactctaaagttccttttttctttttctaccagca 18077244  T
Q  101 ctcttcttctctttcatgacattttcctcaccctcttgtgcagcattattttcatcagaatccttagctgccatgtcatcagcttcaacggaaccttcat 200  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  18077243 ctcttcttctctttcatgacattttcctcaccctcttgtgcaacattgttttcatcagaatccttagcttccatgtcatcagcttcaacggaaccttcat 18077144  T
Q  201 cgtctgacgacaacaccacc 220  Q
    ||||||||||||||||||||    
T  18077143 cgtctgacgacaacaccacc 18077124  T

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Target: chr6; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 102 - 215
Target Start/End: Complemental strand, 18079146 - 18079034
Alignment:
Q  102 tcttcttctctttcatgacattttcctcaccctcttgtgcagcattattttcatcagaatccttagctgccatgtcatcagcttcaacggaaccttcatc 201  Q
    ||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  18079146 tcttcttcttttt-atgacattttcttcaccctcttgtgcagcattgttttcatcagaatccttagctgccatgtcatcagcttcaacagaaccttcatc 18079048  T
Q  202 gtctgacgacaaca 215  Q
    ||| | ||||||||    
T  18079047 gtccgtcgacaaca 18079034  T

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Target: chr1 (Bit Score: 101; Significance: 3e-50; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 92 - 220
Target Start/End: Complemental strand, 51474563 - 51474435
Alignment:
Q  92 ctaccagcactcttcttctctttcatgacattttcctcaccctcttgtgcagcattattttcatcagaatccttagctgccatgtcatcagcttcaacgg 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||||||||||||    
T  51474563 ctaccagcactcttcttctctttcatgacattttcctcaccctcttgtgcaacattgttttcatcagaattcttagttgccatgtcatcagcttcaacgg 51474464  T
Q  192 aaccttcatcgtctgacgacaacaccacc 220  Q
    ||||||||||||| || ||||||| ||||    
T  51474463 aaccttcatcgtccgatgacaacaacacc 51474435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 92 - 220
Target Start/End: Complemental strand, 51478763 - 51478635
Alignment:
Q  92 ctaccagcactcttcttctctttcatgacattttcctcaccctcttgtgcagcattattttcatcagaatccttagctgccatgtcatcagcttcaacgg 191  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||||| |    
T  51478763 ctaccagctctcttcttctctttcatgacattttcttcaccctcttgtgcagcattgttttcatcagaatccttagctgccatgctatcagcttcaacag 51478664  T
Q  192 aaccttcatcgtctgacgacaacaccacc 220  Q
    |||| |||||||| | |||||||| ||||    
T  51478663 aaccatcatcgtccgtcgacaacaacacc 51478635  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 51474668 - 51474610
Alignment:
Q  14 acatcaagaaaaatgagcaaattcaaatgactagatcctggtgatgaaattccactcta 72  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  51474668 acatcaagaaaaatgagcaacttcaaatgactagatcctggtgatgaaattcctctcta 51474610  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 204
Target Start/End: Complemental strand, 51454515 - 51454469
Alignment:
Q  158 gaatccttagctgccatgtcatcagcttcaacggaaccttcatcgtc 204  Q
    |||||| ||||||| ||||||||| ||||||| ||||||||||||||    
T  51454515 gaatccctagctgcaatgtcatcaccttcaaccgaaccttcatcgtc 51454469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 51468159 - 51468115
Alignment:
Q  22 aaaaatgagcaaattcaaatgactagatcctggtgatgaaattcc 66  Q
    ||||| |||||  ||||||||||||||||||||||||| ||||||    
T  51468159 aaaaaagagcatcttcaaatgactagatcctggtgatgcaattcc 51468115  T

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