View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
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| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19602_high_53 (Length: 214)
Name: NF19602_high_53
Description: NF19602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19602_high_53 |
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Alignment Details
Target: chr4 (Bit Score: 134; Significance: 6e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 27070047 - 27070240
Alignment:
| Q |
18 |
gttgaggtattcttatttttggtttcggttttagctagaagtttgttgtttcgctgtttggctcaagcaagtgtgt-----ggatgttttaaattatctt |
112 |
Q |
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| T |
27070047 |
gttggggtattcttatttttggtttcggtttcagctagaagcttgctgttttgctgtttggctcaagcaagtgtgtggtgtggatgttttaaattatgtt |
27070146 |
T |
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| Q |
113 |
ggaatatgttaattagtaacatgttagatgggataggttgtttagtgctagctggtatgcttttttagttaggatgtgttgttgcttctgtgtt |
206 |
Q |
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| T |
27070147 |
ggaatatgttaattagcaacatgttagatgggatgggttgtttagtgctagctggtgtgcttttgtagttaggatgtgttgttgcttctgtgtt |
27070240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 27150133 - 27150326
Alignment:
| Q |
18 |
gttgaggtattcttatttttggtttcggttttagctagaagtttgttgtttcgctgtttggctcaagcaagtgtgt-----ggatgttttaaattatctt |
112 |
Q |
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|||| |||||||||||||||||||||||||| ||||||||| ||| ||||| |||||||||||||||||||||||| |||||||||||||||| || |
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| T |
27150133 |
gttggggtattcttatttttggtttcggtttcagctagaagcttgctgttttgctgtttggctcaagcaagtgtgtggtgtggatgttttaaattatgtt |
27150232 |
T |
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| Q |
113 |
ggaatatgttaattagtaacatgttagatgggataggttgtttagtgctagctggtatgcttttttagttaggatgtgttgttgcttctgtgtt |
206 |
Q |
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|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
27150233 |
ggaatatgttaattagcaacatgttagatgggatgggttgtttagtgctagctggtgtgcttttgtagttaggatgtgttgttgcttctgtgtt |
27150326 |
T |
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