View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19602_low_11 (Length: 427)
Name: NF19602_low_11
Description: NF19602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19602_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 12 - 409
Target Start/End: Original strand, 16585456 - 16585862
Alignment:
| Q |
12 |
atgaatggcggaaatttttgttggctgttgtgagtacctaat--------tgattttaaatcaaatttgtctgcaaatctgtggaggttgactgacccta |
103 |
Q |
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| T |
16585456 |
atgaatgtcggaaatttttgttggctgttgtgagtacctaatgtactaattgattttaaatcaaatttgtctgcaaatctgtggaggttgactgaccctg |
16585555 |
T |
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| Q |
104 |
gttcctggtaaatgttgtataaacgtatgattctatgtnnnnnnnttgtcaaaaatattttaacttaatattttggactattttgagaaaatgtttacga |
203 |
Q |
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| T |
16585556 |
gttcctggtaaatgttgtataaacgtatcattctatgtaaaaaaattgtcaaacatattttaacttaatattttggactattttgagaaaatgtttacga |
16585655 |
T |
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| Q |
204 |
aaatatatcagtggaaaaagaaatttctataaatgtgtctgttgatttatgtgcttatatgtgtgcttgtttgtgaataaacatgatatgttgaatattg |
303 |
Q |
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| T |
16585656 |
aaatatatcagtggaaaaagaaatttctataaatgtgtatgttgatttatgtgcttatatgtgtgcttgtttgtgaataaacatgatatgctgaatattg |
16585755 |
T |
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| Q |
304 |
tattcatatgggattatgtgctttcaatgtgattgtttatcatttgaaatgtt-ttttcatgcggttatgattaaccatatgctgaaacaaattgtgtcc |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16585756 |
tattcatatgggattatgtgctttcaatgtgattgtttatcatttgaaatgttgttttcatgcggttatgattaaccatatgctgaaacaaattgtgtcc |
16585855 |
T |
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| Q |
403 |
caggttg |
409 |
Q |
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| T |
16585856 |
caggttg |
16585862 |
T |
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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 3385266 - 3385217
Alignment:
| Q |
244 |
gttgatttatgtgcttatatgtgtgcttgtttgtgaataaacatgatatg |
293 |
Q |
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| T |
3385266 |
gttgatttatgtgcttgtatgtgtgcttgtttgtgaataaacatcatatg |
3385217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 299
Target Start/End: Original strand, 10344854 - 10344908
Alignment:
| Q |
244 |
gttgatttatgtgcttatatgtgtgcttgtttgtgaataaacatgatatgttgaat |
299 |
Q |
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| T |
10344854 |
gttggtttatgtgctt-tatgtgtgcttatatgtgaataaacatgatatgctgaat |
10344908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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