View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19602_low_13 (Length: 410)
Name: NF19602_low_13
Description: NF19602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19602_low_13 |
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| [»] scaffold0009 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 36698832 - 36699224
Alignment:
| Q |
1 |
gtatatttgaattttgttgttcaaataatacaactgattattaattagagcatcttgaagccagatggcttgcatattgtcttctcaataaagcaacgtg |
100 |
Q |
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| T |
36698832 |
gtatatttgaattttgttgttcaaataatacaactgattattaattagagcatcttgaagccagatggcttgcatattgtcttctcaataaagcaatgtg |
36698931 |
T |
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| Q |
101 |
ttgcatatattttgttggcaatttgagacgggtgatcatcaaagaagagatgagtgtttctgtttgcacaaggtttccatgtttctggtatccctgcaaa |
200 |
Q |
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| T |
36698932 |
ttgcatatattttgttggcaatttgagacgcgtgatcatcaaagaagagatgagtgtttctgtttgcacaaggtttccatgtttctgatatccctgtaaa |
36699031 |
T |
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| Q |
201 |
gaaaatcagttactattcaattcggcccgccaatgccaacataagcctataaaagttcgactcggatcctctcccaaaaagcagctgtatggattaacta |
300 |
Q |
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| T |
36699032 |
gaaaattagttactattcagttcggcccgccaatgccaacataagcctataaaagttcgactcggatcctctccgaaaaagcagctgtatggattaacta |
36699131 |
T |
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| Q |
301 |
gttaaaaaattgttgcaactgcaccgtgagagaggatctgaatcttgttaaatcacacattgaataaccatttgaatttcttcttaccatatt |
393 |
Q |
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| T |
36699132 |
gttaaaaaattgttgcaactgcaccgtgagagaggatctgaatcttgttaaatcacacattgaataaccatttgaatttcttcttaccatatt |
36699224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 2 - 172
Target Start/End: Original strand, 143777 - 143948
Alignment:
| Q |
2 |
tatatttgaattttgttgttcaaataatacaactgatt-attaattagagcatcttgaagccagatggcttgcatattgtcttctcaataaagcaacgtg |
100 |
Q |
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| T |
143777 |
tatatttgtattttgttgttcaaataatacaactgatttattaattagagcattttgaagctagatggcttgcatattgtcttctcaatgaagcaacgtg |
143876 |
T |
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| Q |
101 |
ttgcatatattttgttggcaatttgagacgggtgatcatcaaagaagagatgagtgtttctgtttgcacaag |
172 |
Q |
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| T |
143877 |
ttgcatatattttgttggcaatttgagaggggtgatcatcaaagaagagatgagtgtttctgtttgaacaag |
143948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 169 - 393
Target Start/End: Original strand, 143999 - 144223
Alignment:
| Q |
169 |
caaggtttccatgtttctggtatccctgcaaagaaaatcagttactattcaattcggcccgccaatgccaacataagcctataaaagttcgactcggatc |
268 |
Q |
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| T |
143999 |
caaggtttccatgtttctaatatccctacaaagaaaatcagttactattcaattcggtccaccaatgccaacataagttattataagttcgactcaggtc |
144098 |
T |
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| Q |
269 |
ctctcccaaaaagcagctgtatggattaactagttaaaaaattgttgcaactgcaccgtgagagaggatctgaatcttgttaaatcacacattgaataac |
368 |
Q |
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| T |
144099 |
ctttcccacgaagcagctgtatggattaaccagttaaaaaatggttatagctgcaccgtgagagaggatctgaatcttgctaaatcaaacattgaataac |
144198 |
T |
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| Q |
369 |
catttgaatttcttcttaccatatt |
393 |
Q |
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| T |
144199 |
catttgaatttcttcttaccatatt |
144223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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