View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19602_low_14 (Length: 400)
Name: NF19602_low_14
Description: NF19602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19602_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 9 - 214
Target Start/End: Complemental strand, 43021104 - 43020899
Alignment:
| Q |
9 |
cataggccgatgaaatcaatgactagaaatattgtaaattacacaatgtgattggtcacaccactaatgaatatttctgtttcaaggatatgatatgatt |
108 |
Q |
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| T |
43021104 |
cataggccgatgaaatcaatgactagaaatattgtaaattacacaatgtgattggtcacaccactaatgaatatttctgtttcaaggatatgatatgatt |
43021005 |
T |
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| Q |
109 |
cggaaagtaataaaaacaggaagattgaatttcgattggcaggaaatcgaacatgaaagtaatggcaatggacaggtacccttgaacatcgagatggtca |
208 |
Q |
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| T |
43021004 |
cggaaagtaataaaaacaggaagattgaatttcgattggcaggaaatcgaacatgaaagtattggcaatggacaggtacccttgaacatcgagatggtca |
43020905 |
T |
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| Q |
209 |
aagtcc |
214 |
Q |
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|||||| |
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| T |
43020904 |
aagtcc |
43020899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 236 - 384
Target Start/End: Complemental strand, 43020756 - 43020606
Alignment:
| Q |
236 |
tagaattcttcaacgtagactttctccactgtttctgtatctgnnnnnnnnttttcccgcctgcaggtcccgaatagagggcagtctatatctgtgtgcg |
335 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
43020756 |
tagaattcttcaacgtagactttctccactgtttctgtatctgcaagaaaattttcccgtctgcaggtcacgaatagagggcagtctatatctgtgtgcg |
43020657 |
T |
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| Q |
336 |
cgcacgcgtgtgtgtata--tataatatatgaacaccaatgatgagtatat |
384 |
Q |
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||||||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
43020656 |
cgcacgcatgtgtgtatatatataatatatgaacaccaatgatgagtatat |
43020606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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