View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19602_low_18 (Length: 378)
Name: NF19602_low_18
Description: NF19602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19602_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 30742460 - 30742821
Alignment:
| Q |
1 |
acattgcataccatgtatataaccatctcttaaccttttccatagatttgttgataaccttaagatctttggttgaactttttccatcatttcaaaaaag |
100 |
Q |
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| T |
30742460 |
acattgcataccatgtatataaccatctcttaaccttttccatagatttgttgataaccttaagatctttggttgaactttttccatcatttcaaaaaag |
30742559 |
T |
|
| Q |
101 |
ttcaaattctttgaacctaacatagcaacattttcattaatattgcaatcactcacctctttgttgctcttgagcttatggtatatttttctctttgtgt |
200 |
Q |
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| T |
30742560 |
ttcaaattctttgaacctaacatagcaacattttcattaatagtgcaatcactcacctctttgttgctcttgagcttatggtatatttttctctttgtgt |
30742659 |
T |
|
| Q |
201 |
accttatgcttccacacatgggaatgaactcaaccatctccattttgcgtggtgaaggagtgagagagataattgaaaatacc-aaacaaaggtgttgct |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
30742660 |
accttatgcttccacacatgggaatgaactcaaccatctccattttgcgtggtgaaggagtgagagagataattgaaaataccaaaacaaaggtgttgct |
30742759 |
T |
|
| Q |
300 |
tgctactttatttataggatatataatgttatatagatgcaccacaagtaaatggttctaac |
361 |
Q |
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| T |
30742760 |
agctactttatttataggatatataatgttatatagatgcaccacaagtaaatggttctaac |
30742821 |
T |
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