View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19602_low_2 (Length: 583)
Name: NF19602_low_2
Description: NF19602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19602_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 535; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 2 - 576
Target Start/End: Complemental strand, 546483 - 545909
Alignment:
| Q |
2 |
taattgaccactcaattctatggatatatgtggtggtcttctttagaaagaattggaaaggaaacaatttagtttagcagtcaagcttgatatttatttt |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
546483 |
taattgaccactcaattctatggatatatgcggtggtcttctttagaaagaattggaaaggaaacaatttagtttagcagtcaagcttgatctttatttt |
546384 |
T |
|
| Q |
102 |
gattcaacttgcaagctacaaatatttttctatggtttggtatgagctttagggtagggaactatgttctcctagagaatattctatgcagcagagataa |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
546383 |
gattcaacttgcaagctacaaatatttttctatggtttggtatgagctttagggtagggaactatgttctcctagagaatattctatgcagcagagataa |
546284 |
T |
|
| Q |
202 |
atacccttgaggtgatcatgttttggtagatgcagtcctatggggaagnnnnnnnngggaaaaccattctcaccaatataaaggagaattctggagtgtg |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
546283 |
atacccttgaggtgatcatgttttggtagatgcagtcctatggggaagaaaaaaaagggaaaaccattctcaccaatataaaggagaattctggagtgtg |
546184 |
T |
|
| Q |
302 |
ttttgtgaggggagtatgctgagacattttatgtcaaaaggcacgagatatagtgattgtgttgagtatgcttaaaattagaaaacagagaagtataatg |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
546183 |
ttttgtgaggggagtatgctgagacattttatgtcaaaaggcacgagatatagtgattgtgttgagtatgcttaaaattagaaaacagaggagtataatg |
546084 |
T |
|
| Q |
402 |
gaaaatgccaatgcttgaaattctgttctatatcgaataatattgtgatgcaagtcgggatttgtatgcggtgcagttggttttatgcaatgctgtgaaa |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
546083 |
gaaaatgccaatgcttgaaattctgttctatatcgaataatattgtgatgcaagtcgggatttgtatgcggtgcagttggttttatgcaatgctgtgaaa |
545984 |
T |
|
| Q |
502 |
ttaaaattattttaaactctggtttgattgtaggattgattgaatgattttgacgcaactatatggtgatgatgt |
576 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
545983 |
ttaaaattattttaaactctggtttgattgtaggattgattgaatgattttgatgcaactatatggtgatgatgt |
545909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 35 - 118
Target Start/End: Original strand, 51114326 - 51114409
Alignment:
| Q |
35 |
tggtcttctttagaaagaattggaaaggaaacaatttagtttagcagtcaagcttgatatttattttgattcaacttgcaagct |
118 |
Q |
| |
|
||||||||||| | |||||||||||| |||||||||||| |||| ||||||| | | ||||||||||||||||||||||||| |
|
|
| T |
51114326 |
tggtcttctttggttggaattggaaaggtaacaatttagttaagcattcaagctcggtttttattttgattcaacttgcaagct |
51114409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 116
Target Start/End: Complemental strand, 2218278 - 2218222
Alignment:
| Q |
58 |
aaaggaaacaatttagtttagcagtcaagcttgatatttattttgattcaacttgcaag |
116 |
Q |
| |
|
|||| |||||||||||| || ||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
2218278 |
aaagaaaacaatttagt--agtagtcaagcttgatttctattttgattcaacttgcaag |
2218222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University