View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19602_low_22 (Length: 351)
Name: NF19602_low_22
Description: NF19602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19602_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 26 - 337
Target Start/End: Complemental strand, 40574755 - 40574444
Alignment:
| Q |
26 |
ttttgggaaaattaaagagggaaagaaagaaatgcatatacccttgtgcacgcataagggggtcctcaaaggaagcatctggggcatagatttcaaaatc |
125 |
Q |
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| T |
40574755 |
ttttgggaaaattaaagagggaaagaaagaaatgcatatacccttgtgcacgcataagggggtcctcaaaggaagcatctggggcatagatttcaaaatc |
40574656 |
T |
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| Q |
126 |
gcgagcagtggcacatgatccatatctgaaataccacaccaacgtccatacaataagaatacaacagtagttgaaaataaagtcgataagcagtatgaat |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40574655 |
gcgagcagtggcacatgatccatatctgaaataccacaccaacgtccatacaataagaatacaacagtagttgaaaataaagtcgataagcagtatgaat |
40574556 |
T |
|
| Q |
226 |
ttataagcagtacaaggcaagtcttgaaaacctagcatgatccaaaccataagacatagcacaccaggaatttgctacattatggaaataaacttctcac |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40574555 |
ttataagcagtacaaggcaagtcttgaaaacctagcatgatccaaaccataagacatagcacaccaggaatttgctacattatggaaataaacttctcac |
40574456 |
T |
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| Q |
326 |
gaacttcttatt |
337 |
Q |
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|||||||||||| |
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| T |
40574455 |
gaacttcttatt |
40574444 |
T |
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