View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19602_low_23 (Length: 335)
Name: NF19602_low_23
Description: NF19602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19602_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 21 - 320
Target Start/End: Original strand, 9592531 - 9592830
Alignment:
| Q |
21 |
ctatagactatattagtaaaagaattggtgcgaagggaaccaacatgatgttttcagtcaggatgacagatgatcctgtataatgatgtcagtggagttg |
120 |
Q |
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| T |
9592531 |
ctatagactatattactaaaagaattggtgggaagggaaccaacatgat-ttttcagtcaggatgacagatgatcctgtataatgatgtcagtggagttg |
9592629 |
T |
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| Q |
121 |
aattgctatccattattacaaaa-aaccaaagtcagcataatacaaatacttaacaacattgtatttgtaattggtacctgctgcagaatatcacaagca |
219 |
Q |
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||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
9592630 |
aattgctatccattattacaaaaaaaccaaattcagcataatacaaatacttaacaacattgtatttgtaattggtacctgctacagaatatcacaagca |
9592729 |
T |
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| Q |
220 |
tgtgattcgtggttttccaaatatgaatttgcttcaaattgaccagaaaaacataaagtacaacaaccagattaatagtaagaaatttatcaggaaagat |
319 |
Q |
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| T |
9592730 |
tgtgattcgtggttttccaaatatgaatttgcttcaaattgaccagaaaaacataaagtacaacaaccagattaatagtaagaaatttatcaggaaagat |
9592829 |
T |
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Back To:
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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 310
Target Start/End: Complemental strand, 29014680 - 29014630
Alignment:
| Q |
260 |
gaccagaaaaacataaagtacaacaaccagattaatagtaagaaatttatc |
310 |
Q |
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||||| || ||||||||||||||| ||||||| |||||||||||| ||||| |
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| T |
29014680 |
gaccacaataacataaagtacaactaccagatcaatagtaagaaagttatc |
29014630 |
T |
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