View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19602_low_27 (Length: 305)
Name: NF19602_low_27
Description: NF19602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19602_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 17 - 295
Target Start/End: Complemental strand, 32277520 - 32277242
Alignment:
| Q |
17 |
atgatgtcggtttacaagcgcccggacggtgctccattctccttcacctattttgtagagcagggaactcagctactgaaccttacattgttgctcacaa |
116 |
Q |
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| T |
32277520 |
atgatgtcggtttacaagcgcccggacggtgctccattctccttcatctattttgtagagcagggaactcagctactgaaccttacattgttgctcacaa |
32277421 |
T |
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| Q |
117 |
tgtcctacttactcatgccgcagtagcagatatttataggaaaaagtataaggtaaagtcatggacaaatgagtttcactgtgatggttataaagtttct |
216 |
Q |
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| T |
32277420 |
tgtcctacttactcatgccgcagtagcagatatttataggaaaaagtataaggtaaagtcatggacaaatgaatttcactgtgatggttataaagtttct |
32277321 |
T |
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| Q |
217 |
atcctgttaagaatgcaatggaatgaatcacatttgcaattagtattttggttcggtgcacttaggatataaagtataa |
295 |
Q |
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| T |
32277320 |
atcctgttaagaatgcaatggaatgaatcacatttgcaattagtattttggttcggtgcacttaggatataaagtataa |
32277242 |
T |
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Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 82 - 175
Target Start/End: Complemental strand, 19343947 - 19343854
Alignment:
| Q |
82 |
aactcagctactgaaccttacattgttgctcacaatgtcctacttactcatgccgcagtagcagatatttataggaaaaagtataaggtaaagt |
175 |
Q |
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||||| |||||||||||||| ||||| ||||| |||||||| ||| | |||||| ||||||||| ||||||||||||| ||| ||||||||| |
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| T |
19343947 |
aactctgctactgaaccttatattgtagctcataatgtccttctttcacatgccattgtagcagatgtttataggaaaaaatatcaggtaaagt |
19343854 |
T |
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