View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19602_low_3 (Length: 534)
Name: NF19602_low_3
Description: NF19602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19602_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 10 - 517
Target Start/End: Original strand, 11155861 - 11156369
Alignment:
| Q |
10 |
ataatactataatatgtgcatttgataatggttgcaatcaaacaaaaatgatcatatagttaaataaggtagcggcgccgtctgtattt-gttttcagtt |
108 |
Q |
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||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
11155861 |
ataatactataatatatgcatttgataatggttgcaatccaacaaaaatgatcatatagttaattaaggtagcggcgccgtctgtattttgttttcagtt |
11155960 |
T |
|
| Q |
109 |
tttgccgcgagtttttgtgtgccttgcatttactcgacgtgaataaatttgccatttcnnnnnnnn--gttaattaaggtagcttcaaaatctagggtta |
206 |
Q |
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|||||||||||||||| || |||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||| |
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| T |
11155961 |
tttgccgcgagtttttatgcgccttgcatttactcgacgtgaataaattttccgtttcaaaaaaaaaagttaattaaggtagcttcaaaatctagggtta |
11156060 |
T |
|
| Q |
207 |
tttttataatgattaaatnnnnnnnnnccatttcaagaagttcatcatctatgaaaattaaatactacatcacaaggctaagagtaacacttattttacc |
306 |
Q |
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|||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11156061 |
tttttataatgattaaataaaaaaa--ccatttcaagaagttaatcatctatgaaaattaaatactacatcacaaggctaagagtaacacttattttacc |
11156158 |
T |
|
| Q |
307 |
tatgctgaaataatacaggcacaaggtcctagttggacagttcctttaggaagaagggatggtttaactgcaaaccgaacacttgcaaatcaaaatcttc |
406 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11156159 |
tatgatgaaataatacaggcacaaggtcctagttggacagttcctttaggaagaagggatggtttaactgcaaaccggacacttgcaaatcaaaatcttc |
11156258 |
T |
|
| Q |
407 |
cggccccattcaataccttggttcaacttaaagctgcatttactgcccaaggcctgaatactactgatctagttgcactctcgggtttgtgctcatttta |
506 |
Q |
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| T |
11156259 |
cggccccattcaataccttggttcaacttaaagctgcatttactgcccaaggcctgaatactactgatctagttgcactctcgggtttgtgctcatttta |
11156358 |
T |
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| Q |
507 |
gcgatgatgtt |
517 |
Q |
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||||||||||| |
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| T |
11156359 |
gcgatgatgtt |
11156369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 321 - 488
Target Start/End: Original strand, 11137226 - 11137393
Alignment:
| Q |
321 |
acaggcacaaggtcctagttggacagttcctttaggaagaagggatggtttaactgcaaaccgaacacttgcaaatcaaaatcttccggccccattcaat |
420 |
Q |
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||||||| | ||||||| ||||| ||||| ||||||||||||||||||||||| || |||| | | || || ||||||||||||||||| ||||||||| |
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| T |
11137226 |
acaggcagatggtcctaattggaaggttcccttaggaagaagggatggtttaaccgccaaccaatcgctcgctaatcaaaatcttccggctccattcaat |
11137325 |
T |
|
| Q |
421 |
accttggttcaacttaaagctgcatttactgcccaaggcctgaatactactgatctagttgcactctc |
488 |
Q |
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| T |
11137326 |
tcgttggatcaacttaaatctgcatttgctgctcaaggcctcagtactactgatctagttgctctctc |
11137393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 328 - 492
Target Start/End: Original strand, 11145548 - 11145712
Alignment:
| Q |
328 |
caaggtcctagttggacagttcctttaggaagaagggatggtttaactgcaaaccgaacacttgcaaatcaaaatcttccggccccattcaataccttgg |
427 |
Q |
| |
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||||||||| ||||| |||||||||||||||||| ||||||||||| ||||||| | ||||||| |||||||||||||| || || || || | || | |
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| T |
11145548 |
caaggtcctgattggaaagttcctttaggaagaagagatggtttaacagcaaaccaatcacttgctaatcaaaatcttccagctccttttaactcattag |
11145647 |
T |
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| Q |
428 |
ttcaacttaaagctgcatttactgcccaaggcctgaatactactgatctagttgcactctcgggt |
492 |
Q |
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|||||| |||||||||||| || | |||||||| | |||||||||||||||||||||||||||| |
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| T |
11145648 |
atcaactcaaagctgcatttgcttctcaaggcctcagtactactgatctagttgcactctcgggt |
11145712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 340 - 492
Target Start/End: Original strand, 11149495 - 11149647
Alignment:
| Q |
340 |
tggacagttcctttaggaagaagggatggtttaactgcaaaccgaacacttgcaaatcaaaatcttccggccccattcaataccttggttcaacttaaag |
439 |
Q |
| |
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|||| |||||||||||||||||| ||||||||||| ||||||| | |||||| ||| |||||||||| || || |||||||| | ||||||||||| |
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| T |
11149495 |
tggaaagttcctttaggaagaagagatggtttaacagcaaaccaattacttgctaataaaaatcttccagctcctttcaatactactgatcaacttaaag |
11149594 |
T |
|
| Q |
440 |
ctgcatttactgcccaaggcctgaatactactgatctagttgcactctcgggt |
492 |
Q |
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| T |
11149595 |
ctgcatttgctgctcaaggtctcgatactactgatctggttgcactctcgggt |
11149647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 355 - 488
Target Start/End: Original strand, 11097401 - 11097534
Alignment:
| Q |
355 |
ggaagaagggatggtttaactgcaaaccgaacacttgcaaatcaaaatcttccggccccattcaataccttggttcaacttaaagctgcatttactgccc |
454 |
Q |
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|||||||||||| ||||||| ||||||| | | |||||||||||||| ||||| || || || || |||| ||||||||||||||||||| || | |
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| T |
11097401 |
ggaagaagggatagtttaacagcaaaccaagcccttgcaaatcaaaaccttccagcaccctttttcacattggatcaacttaaagctgcatttcttgttc |
11097500 |
T |
|
| Q |
455 |
aaggcctgaatactactgatctagttgcactctc |
488 |
Q |
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|||| || || ||||| ||| ||||| ||||||| |
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| T |
11097501 |
aaggtctcaacactacagatttagttacactctc |
11097534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 413
Target Start/End: Complemental strand, 10793869 - 10793785
Alignment:
| Q |
329 |
aaggtcctagttggacagttcctttaggaagaagggatggtttaactgcaaaccgaacacttgcaaatcaaaatcttccggcccc |
413 |
Q |
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||||||| |||||| ||||| || |||||||||||| || |||| ||||| ||||| || ||||||||||||||||| ||||| |
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| T |
10793869 |
aaggtcccggttggatcgttccattgggaagaagggatagtctaacagcaaatcgaaccctcgcaaatcaaaatcttccagcccc |
10793785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 166
Target Start/End: Complemental strand, 35443325 - 35443290
Alignment:
| Q |
131 |
cttgcatttactcgacgtgaataaatttgccatttc |
166 |
Q |
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| T |
35443325 |
cttgcatttactcgacgagaataaatttgccatttc |
35443290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 166
Target Start/End: Complemental strand, 8503978 - 8503932
Alignment:
| Q |
120 |
tttttgtgtgccttgcatttactcgacgtgaataaatttgccatttc |
166 |
Q |
| |
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||||| || ||||||||||||||||||| |||||||||||||||||| |
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| T |
8503978 |
tttttatgcgccttgcatttactcgacgagaataaatttgccatttc |
8503932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 120 - 166
Target Start/End: Original strand, 46282702 - 46282748
Alignment:
| Q |
120 |
tttttgtgtgccttgcatttactcgacgtgaataaatttgccatttc |
166 |
Q |
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||||| |||| ||||||||||||||||| ||||||||||| |||||| |
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| T |
46282702 |
tttttatgtgtcttgcatttactcgacgagaataaatttgtcatttc |
46282748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 108 - 166
Target Start/End: Complemental strand, 31034376 - 31034318
Alignment:
| Q |
108 |
ttttgccgcgagtttttgtgtgccttgcatttactcgacgtgaataaatttgccatttc |
166 |
Q |
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|||| |||||||| ||| || | ||||||||||||||||| |||||||||| ||||||| |
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| T |
31034376 |
tttttccgcgagtgtttatgcgtcttgcatttactcgacgagaataaatttaccatttc |
31034318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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