View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19602_low_31 (Length: 293)
Name: NF19602_low_31
Description: NF19602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19602_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 63 - 278
Target Start/End: Original strand, 828292 - 828507
Alignment:
| Q |
63 |
ctttgtttcaaaggaccaatcatcaagctgtgaagggagtctgannnnnnnnaaaatatgattttctattcagacacactgcacacttttaatttggtga |
162 |
Q |
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| T |
828292 |
ctttgtttcaaaggaccaatcatcaagttgtgaagggagtctgattttttttaaaatatgattttctattcagacacactgcacacttttaatttggtga |
828391 |
T |
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| Q |
163 |
gggaagcaaggcacacctatcatcttcacaccaattatgagatagagctcataaggaatttgatggctaataagtggcattttgaacttcatcacatcgt |
262 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
828392 |
gggaagcaaagcacacctatcatcttcacaccaattatgagatagagctcataaggaatttgatggctaataagtggcattttgaacttcatcacatctt |
828491 |
T |
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| Q |
263 |
tttttagtgttctaat |
278 |
Q |
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|||||||||||||||| |
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| T |
828492 |
tttttagtgttctaat |
828507 |
T |
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