View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19602_low_33 (Length: 286)
Name: NF19602_low_33
Description: NF19602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19602_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 279
Target Start/End: Original strand, 1972125 - 1972382
Alignment:
| Q |
19 |
tggttattttaaaatatttgattgaaattccaattgttattttgtttcattgttcttgagaatgtaattttcccatttcacattggtggttgatttgaag |
118 |
Q |
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| T |
1972125 |
tggttattttaaaatatttgattgaaattctaattgttgttttgtttcattgttcttgagaatgtaattttcccatttcacattggtggttgatttgaag |
1972224 |
T |
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| Q |
119 |
cttttgattggaatccatctacactatatgatatacaacaaagattttattgtgacttcaactctcatattgctattctaagatatacaataatgaatag |
218 |
Q |
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| T |
1972225 |
cttt-gattggaatccatctacactatatgata--caacaaagattttattgtgacttcaactttcatattgctattctaagatatacaataatgaatag |
1972321 |
T |
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| Q |
219 |
gtttgtggttacatccctatcgttctattttgaattcccattttgaaaatttcctttgctt |
279 |
Q |
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| T |
1972322 |
gtttgtggttacatctctatcgttctattttgaattcccattttaaaaatttcctttgctt |
1972382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 34 - 114
Target Start/End: Original strand, 19963359 - 19963439
Alignment:
| Q |
34 |
atttgattgaaattccaattgttattttgtttcattgttcttgagaatgtaattttcccatttcacattggtggttgattt |
114 |
Q |
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| T |
19963359 |
atttgattgaaattctaattgttgttttgtttcattgttcttgagaatgtaattttcccatttcacattggtggttcattt |
19963439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 114
Target Start/End: Original strand, 19963451 - 19963497
Alignment:
| Q |
68 |
ttgttcttgagaatgtaattttcccatttcacattggtggttgattt |
114 |
Q |
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| T |
19963451 |
ttgttcctgagaatgtaattttcccatttcacattggtggttcattt |
19963497 |
T |
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