View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19602_low_43 (Length: 242)
Name: NF19602_low_43
Description: NF19602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19602_low_43 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 18729970 - 18730192
Alignment:
| Q |
1 |
cttaattgaccgtgaactaactcctgtaaaaattgtcactcctagatccaatttggatctggattcttgtcatggtttcgaatattctaaaactatccgt |
100 |
Q |
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| T |
18729970 |
cttaattgacagtgaactaactcctgtaaaaattgtcactcctagatccaatttggatctggattcttgtcatggtttcaaatattcaaaaactatccgt |
18730069 |
T |
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| Q |
101 |
aacccgacccacttgaatataactccttagaaattccacaagaacaggtctggaattaccaacccatccatattctcttctacataatcaaaatctggca |
200 |
Q |
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| T |
18730070 |
aacccgacccacttgaatatcactccttagaaattccacaagaaaaggtctggaattaccaacccatccatattctcttctacataatcaaaatctggca |
18730169 |
T |
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| Q |
201 |
tctccggcacgtagaaatcgtga |
223 |
Q |
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| T |
18730170 |
tctccggcacgtagaaatcgtga |
18730192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 31 - 220
Target Start/End: Original strand, 18732773 - 18732962
Alignment:
| Q |
31 |
aattgtcactcctagatccaatttggatctggattcttgtcatggtttcgaatattctaaaactatccgtaacccgacccacttgaatataactccttag |
130 |
Q |
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| T |
18732773 |
aattggcactcgtagatccaatgtggacccgggttcttgtcgcggtttcggatatactaaaactatccgcaacccgaccaacttgaatatcatttcttag |
18732872 |
T |
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| Q |
131 |
aaattccacaagaacaggtctggaattaccaacccatccatattctcttctacataatcaaaatctggcatctccggcacgtagaaatcg |
220 |
Q |
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| T |
18732873 |
aaattccacaagaacaggtctggaattaccaacccatccatgttctcttctacataatcaaaatctgacatctccggcacgtagaaatcg |
18732962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 220
Target Start/End: Original strand, 18735353 - 18735447
Alignment:
| Q |
126 |
cttagaaattccacaagaacaggtctggaattaccaacccatccatattctcttctacataatcaaaatctggcatctccggcacgtagaaatcg |
220 |
Q |
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| T |
18735353 |
cttagaaattccataagaatgaatcttgtattatcaacccatccatgttctcttcttcataagcaaaatttgtcaactccggcacataaaaatcg |
18735447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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