View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19602_low_45 (Length: 240)

Name: NF19602_low_45
Description: NF19602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19602_low_45
NF19602_low_45
[»] chr6 (12 HSPs)
chr6 (115-203)||(6969295-6969383)
chr6 (115-203)||(4107953-4108041)
chr6 (112-203)||(15045546-15045637)
chr6 (114-203)||(28573828-28573917)
chr6 (138-186)||(4897511-4897559)
chr6 (127-189)||(9981273-9981335)
chr6 (116-186)||(25529241-25529311)
chr6 (138-190)||(1218540-1218592)
chr6 (138-182)||(9737773-9737817)
chr6 (138-190)||(18323857-18323909)
chr6 (146-190)||(24443957-24444001)
chr6 (139-185)||(33328295-33328341)
[»] chr3 (19 HSPs)
chr3 (114-203)||(8393561-8393650)
chr3 (136-203)||(18682509-18682576)
chr3 (115-203)||(26777850-26777938)
chr3 (115-194)||(4139356-4139435)
chr3 (123-203)||(53800506-53800586)
chr3 (139-186)||(28981834-28981881)
chr3 (138-186)||(19368958-19369006)
chr3 (138-190)||(22519211-22519263)
chr3 (138-186)||(29530578-29530626)
chr3 (138-186)||(35855226-35855274)
chr3 (113-161)||(39838225-39838273)
chr3 (139-186)||(40831943-40831990)
chr3 (114-180)||(11602187-11602253)
chr3 (116-190)||(19895658-19895732)
chr3 (138-186)||(8528120-8528168)
chr3 (138-186)||(11955542-11955590)
chr3 (112-186)||(22473640-22473714)
chr3 (138-186)||(26102167-26102215)
chr3 (138-190)||(55297356-55297408)
[»] scaffold0759 (1 HSPs)
scaffold0759 (115-203)||(5891-5979)
[»] chr7 (20 HSPs)
chr7 (115-203)||(688062-688150)
chr7 (115-198)||(4848347-4848430)
chr7 (115-203)||(49146122-49146211)
chr7 (137-203)||(9143497-9143563)
chr7 (138-203)||(39276635-39276700)
chr7 (138-190)||(11840460-11840512)
chr7 (138-190)||(21600983-21601035)
chr7 (138-186)||(29467773-29467821)
chr7 (132-186)||(24684650-24684704)
chr7 (138-203)||(21670792-21670857)
chr7 (138-191)||(39651160-39651213)
chr7 (138-186)||(35157012-35157060)
chr7 (138-186)||(44804542-44804590)
chr7 (123-186)||(29684130-29684193)
chr7 (138-190)||(17169046-17169098)
chr7 (130-190)||(31899998-31900058)
chr7 (126-163)||(46197427-46197464)
chr7 (150-186)||(3791513-3791549)
chr7 (138-186)||(34872191-34872239)
chr7 (138-190)||(48529946-48529998)
[»] chr4 (30 HSPs)
chr4 (136-203)||(5752471-5752538)
chr4 (115-203)||(12682755-12682843)
chr4 (115-191)||(3821210-3821286)
chr4 (123-203)||(46104186-46104266)
chr4 (132-186)||(8956932-8956986)
chr4 (132-186)||(8986904-8986958)
chr4 (132-186)||(37349802-37349856)
chr4 (114-183)||(24948306-24948375)
chr4 (115-203)||(2116088-2116176)
chr4 (138-186)||(13171647-13171695)
chr4 (138-186)||(50119974-50120022)
chr4 (138-186)||(51347510-51347558)
chr4 (132-186)||(9888906-9888960)
chr4 (128-186)||(35833430-35833488)
chr4 (146-186)||(17730463-17730503)
chr4 (138-186)||(24547353-24547401)
chr4 (138-186)||(29712392-29712440)
chr4 (142-186)||(30529295-30529339)
chr4 (138-190)||(39716730-39716782)
chr4 (116-191)||(35498544-35498619)
chr4 (113-186)||(39406248-39406321)
chr4 (146-186)||(3757756-3757796)
chr4 (127-191)||(15704122-15704186)
chr4 (138-186)||(20588584-20588632)
chr4 (116-170)||(47560251-47560305)
chr4 (132-186)||(50033697-50033750)
chr4 (150-186)||(35716315-35716351)
chr4 (138-186)||(36743218-36743266)
chr4 (138-190)||(52799047-52799099)
chr4 (150-186)||(53991568-53991604)
[»] scaffold0051 (1 HSPs)
scaffold0051 (113-203)||(62059-62149)
[»] chr1 (18 HSPs)
chr1 (115-191)||(16300388-16300464)
chr1 (114-191)||(47134702-47134779)
chr1 (123-203)||(5426223-5426303)
chr1 (114-185)||(19322362-19322433)
chr1 (115-186)||(38894754-38894825)
chr1 (138-186)||(33075673-33075721)
chr1 (138-186)||(46626341-46626389)
chr1 (132-186)||(28570741-28570795)
chr1 (114-191)||(52306067-52306144)
chr1 (138-190)||(1367313-1367365)
chr1 (102-190)||(17364616-17364704)
chr1 (138-186)||(22198924-22198972)
chr1 (115-186)||(1826792-1826863)
chr1 (112-186)||(29844898-29844972)
chr1 (138-190)||(4890120-4890172)
chr1 (138-190)||(29188313-29188365)
chr1 (138-190)||(33359722-33359774)
chr1 (139-186)||(50557850-50557896)
[»] chr8 (20 HSPs)
chr8 (123-198)||(25616503-25616578)
chr8 (125-186)||(41972965-41973026)
chr8 (115-203)||(4466420-4466508)
chr8 (123-203)||(7389205-7389285)
chr8 (138-186)||(24053936-24053984)
chr8 (116-203)||(25620714-25620801)
chr8 (132-186)||(8760717-8760771)
chr8 (132-186)||(25836282-25836336)
chr8 (138-186)||(36776426-36776474)
chr8 (139-186)||(40616111-40616158)
chr8 (132-186)||(1942805-1942859)
chr8 (132-186)||(8162792-8162846)
chr8 (138-186)||(40587709-40587757)
chr8 (138-190)||(41534261-41534313)
chr8 (132-186)||(32844165-32844219)
chr8 (138-186)||(25346056-25346104)
chr8 (139-186)||(45435013-45435060)
chr8 (138-186)||(9472174-9472221)
chr8 (138-190)||(18378815-18378867)
chr8 (114-162)||(41152666-41152714)
[»] chr2 (14 HSPs)
chr2 (112-203)||(28607217-28607308)
chr2 (112-191)||(24520862-24520941)
chr2 (115-186)||(32677200-32677271)
chr2 (138-186)||(17836989-17837037)
chr2 (138-186)||(19486211-19486259)
chr2 (138-190)||(2952779-2952831)
chr2 (138-190)||(4292795-4292847)
chr2 (138-190)||(9545788-9545840)
chr2 (138-191)||(10050201-10050254)
chr2 (138-186)||(9920926-9920974)
chr2 (138-190)||(18096513-18096565)
chr2 (127-186)||(19486128-19486187)
chr2 (138-186)||(10876588-10876634)
chr2 (138-186)||(42781033-42781081)
[»] chr5 (14 HSPs)
chr5 (116-190)||(3088044-3088118)
chr5 (132-186)||(6305466-6305520)
chr5 (116-190)||(33709826-33709900)
chr5 (132-186)||(43138563-43138617)
chr5 (138-186)||(36886985-36887033)
chr5 (123-186)||(12422361-12422424)
chr5 (132-186)||(754461-754515)
chr5 (112-186)||(17643402-17643476)
chr5 (116-198)||(34727340-34727422)
chr5 (138-190)||(25698730-25698782)
chr5 (138-186)||(30754431-30754479)
chr5 (138-190)||(41689297-41689349)
chr5 (115-186)||(12592485-12592556)
chr5 (138-191)||(30140524-30140577)
[»] scaffold0009 (2 HSPs)
scaffold0009 (138-191)||(225457-225510)
scaffold0009 (138-186)||(108569-108617)
[»] scaffold0381 (1 HSPs)
scaffold0381 (132-186)||(9585-9639)
[»] scaffold0057 (1 HSPs)
scaffold0057 (113-190)||(20592-20669)
[»] scaffold0385 (1 HSPs)
scaffold0385 (138-186)||(8317-8365)


Alignment Details
Target: chr6 (Bit Score: 77; Significance: 7e-36; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 115 - 203
Target Start/End: Complemental strand, 6969383 - 6969295
Alignment:
Q  115 atctataaactaatataaaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaattacaaaattgttgag 203  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  6969383 atctatatactaatataaaagttaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaaattgttgag 6969295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 203
Target Start/End: Original strand, 4107953 - 4108041
Alignment:
Q  115 atctataaactaatataaaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaattacaaaattgttgag 203  Q
    ||||||| |||||||||||||||||||||| |||| ||||||||||| | ||||| ||| |||||||||||||||||||| | ||||||    
T  4107953 atctatatactaatataaaagttaatgtccattgattttaccatttttcccctatgaggggcaatttggtaaattacaaattggttgag 4108041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 112 - 203
Target Start/End: Complemental strand, 15045637 - 15045546
Alignment:
Q  112 tatatctataaactaatataaaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaattacaaaattgttgag 203  Q
    |||||||||| ||| |||| |||   |||||||||||||||||||||||||| ||||||| | | |||||||||||||||||| ||||||||    
T  15045637 tatatctatatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaagggtaatttggtaaattacaaatttgttgag 15045546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 114 - 203
Target Start/End: Complemental strand, 28573917 - 28573828
Alignment:
Q  114 tatctataaactaatataaaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaattacaaaattgttgag 203  Q
    |||||||| ||| |||||||||||||| ||| |||| ||||||||||||| ||||  ||| |||||||||||||||||||| | ||||||    
T  28573917 tatctatatactgatataaaagttaatatcctttgattttaccattttgcccctaggaggggcaatttggtaaattacaaattggttgag 28573828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 4897559 - 4897511
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  4897559 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 4897511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 9981335 - 9981273
Alignment:
Q  127 atataaaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaatt 189  Q
    |||||||||  ||||| | |||||||||||||||| | ||||||||| |||||||||||||||    
T  9981335 atataaaaggaaatgttcattgaatttaccattttacccctataaggggcaatttggtaaatt 9981273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 116 - 186
Target Start/End: Original strand, 25529241 - 25529311
Alignment:
Q  116 tctataaactaatataaaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||| |||||||||||| |  |||||| |||  ||||| ||||||||||||||||| ||||||||||||    
T  25529241 tctatatactaatataaaaatccatgtccgttgcttttacgattttgctcctataaggggcaatttggtaa 25529311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 1218540 - 1218592
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaatta 190  Q
    ||||||| |||||||||||||||||| ||||| | | ||||||||||||||||    
T  1218540 aatgtcctttgaatttaccattttgcccctattaagggcaatttggtaaatta 1218592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 9737817 - 9737773
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttg 182  Q
    |||||||||||||||||||||||||  ||||||||| ||||||||    
T  9737817 aatgtcccttgaatttaccattttgtccctataaggggcaatttg 9737773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 18323857 - 18323909
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaatta 190  Q
    ||||||| |||||||||||||||||| ||||| |  |||||||||||||||||    
T  18323857 aatgtcctttgaatttaccattttgcccctattaaaagcaatttggtaaatta 18323909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 24443957 - 24444001
Alignment:
Q  146 ttgaatttaccattttgctcctataaggagcaatttggtaaatta 190  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||||    
T  24443957 ttgaatttaccattttgcccctattaggggcaatttggtaaatta 24444001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 33328341 - 33328295
Alignment:
Q  139 atgtcccttgaatttaccattttgctcctataaggagcaatttggta 185  Q
    |||||| || |||||||||||||||||||| |||| |||||||||||    
T  33328341 atgtcctttaaatttaccattttgctcctacaaggggcaatttggta 33328295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 4e-34; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 114 - 203
Target Start/End: Original strand, 8393561 - 8393650
Alignment:
Q  114 tatctataaactaatataaaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaattacaaaattgttgag 203  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  8393561 tatctatatactaatataaaagttaatgtcctttgaatttaccattttgcccctataaggggcaatttggtaaattacaaaattgttgag 8393650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 18682509 - 18682576
Alignment:
Q  136 ttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaattacaaaattgttgag 203  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  18682509 ttaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaaattgttgag 18682576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 203
Target Start/End: Complemental strand, 26777938 - 26777850
Alignment:
Q  115 atctataaactaatataaaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaattacaaaattgttgag 203  Q
    ||||||| ||||||||||||||||| |||| |||| ||||||||||||| ||||| ||| |||||||||||||||||||| | ||||||    
T  26777938 atctatatactaatataaaagttaacgtccattgattttaccattttgcccctatgaggggcaatttggtaaattacaaattggttgag 26777850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 115 - 194
Target Start/End: Complemental strand, 4139435 - 4139356
Alignment:
Q  115 atctataaactaatataaaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaattacaaa 194  Q
    ||||||| |||||||||||||||||||||| |||| ||||||||||||  ||||| ||| ||||||||||||||||||||    
T  4139435 atctatatactaatataaaagttaatgtccattgattttaccattttgtccctattaggggcaatttggtaaattacaaa 4139356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 53800506 - 53800586
Alignment:
Q  123 actaatataaaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaattacaaaattgttgag 203  Q
    |||||||||||||||||||||| |||| ||||||||||||| | ||  ||| |||||||||||||||||||| | ||||||    
T  53800506 actaatataaaagttaatgtccattgattttaccattttgcccttaggaggggcaatttggtaaattacaaattggttgag 53800586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 139 - 186
Target Start/End: Complemental strand, 28981881 - 28981834
Alignment:
Q  139 atgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  28981881 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 28981834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 19369006 - 19368958
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||||||||| ||||||||||||| ||||||||| ||||||||||||    
T  19369006 aatgtcccttgattttaccattttgcccctataaggggcaatttggtaa 19368958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 22519211 - 22519263
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaatta 190  Q
    ||||||| |||||||||||||||||| ||||||||| ||||||| ||||||||    
T  22519211 aatgtccattgaatttaccattttgcccctataaggggcaatttagtaaatta 22519263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 29530626 - 29530578
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||||||||||||||||||||||  ||||||||| ||||||||||||    
T  29530626 aatgtcccttgaatttaccattttgtccctataaggggcaatttggtaa 29530578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 35855226 - 35855274
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||||||| ||||||||||||||| ||||||||| ||||||||||||    
T  35855226 aatgtcccttaaatttaccattttgcccctataaggggcaatttggtaa 35855274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 39838273 - 39838225
Alignment:
Q  113 atatctataaactaatataaaagttaatgtcccttgaatttaccatttt 161  Q
    ||||||||| |||||||||||||||||||||| |||| |||||||||||    
T  39838273 atatctatatactaatataaaagttaatgtccgttgattttaccatttt 39838225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 186
Target Start/End: Complemental strand, 40831990 - 40831943
Alignment:
Q  139 atgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||||||||||||||||||||||||||||||||  ||||| |||||    
T  40831990 atgtcccttgaatttaccattttgctcctataagggacaattcggtaa 40831943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 114 - 180
Target Start/End: Complemental strand, 11602253 - 11602187
Alignment:
Q  114 tatctataaactaatataaaagttaatgtcccttgaatttaccattttgctcctataaggagcaatt 180  Q
    |||||||| |||||||||||| |  |||||| |||| ||||||||||||| ||||||||| ||||||    
T  11602253 tatctatatactaatataaaaatccatgtccgttgattttaccattttgcccctataaggggcaatt 11602187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 116 - 190
Target Start/End: Complemental strand, 19895732 - 19895658
Alignment:
Q  116 tctataaactaatataaaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaatta 190  Q
    |||||| ||| ||||| |||  ||||||| |||||||||||||||||| | ||||| | ||||||||||||||||    
T  19895732 tctatatacttatatagaagaaaatgtccattgaatttaccattttgcccttataaagggcaatttggtaaatta 19895658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 8528168 - 8528120
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||||||||||||||||||| ||  ||||||||| ||||||||||||    
T  8528168 aatgtcccttgaatttaccattctgtccctataaggggcaatttggtaa 8528120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 11955590 - 11955542
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||||| || |||||||||||||| ||||||||| ||||||||||||    
T  11955590 aatgtcccatggatttaccattttgcccctataaggggcaatttggtaa 11955542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 186
Target Start/End: Original strand, 22473640 - 22473714
Alignment:
Q  112 tatatctataaactaatataaaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||||||| ||| |||| |||   ||||| || || |||||||||||||| ||||||||| ||||||||||||    
T  22473640 tatatctatatacttatattaaaagaaatgttccatggatttaccattttgcccctataaggggcaatttggtaa 22473714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 26102215 - 26102167
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    ||||||| |||||||||||||||||| ||||||||  | ||||||||||    
T  26102215 aatgtcctttgaatttaccattttgcccctataagaggtaatttggtaa 26102167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 55297408 - 55297356
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaatta 190  Q
    ||||||||| |||||||||||||| | ||||||| | | ||||||||||||||    
T  55297408 aatgtccctcgaatttaccattttacccctataaagggtaatttggtaaatta 55297356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0759 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0759
Description:

Target: scaffold0759; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 115 - 203
Target Start/End: Complemental strand, 5979 - 5891
Alignment:
Q  115 atctataaactaatataaaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaattacaaaattgttgag 203  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  5979 atctatatactaatataaaagttaatgtcccatgaatttaccattttgcccctataaggggcaatttggtaaattacaaaattgttgag 5891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 115 - 203
Target Start/End: Original strand, 688062 - 688150
Alignment:
Q  115 atctataaactaatataaaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaattacaaaattgttgag 203  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  688062 atctatatactaatataaaagttaatgtcctttgaatttaccattttgcccctataaggggcaatttggtaaattacaaaattgttgag 688150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 115 - 198
Target Start/End: Original strand, 4848347 - 4848430
Alignment:
Q  115 atctataaactaatataaaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaattacaaaattg 198  Q
    ||||||| |||||||||||||||||||||| |||| ||||||||||||| ||||| ||| | ||||||||||||||||||||||    
T  4848347 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctatgaggggtaatttggtaaattacaaaattg 4848430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 115 - 203
Target Start/End: Complemental strand, 49146211 - 49146122
Alignment:
Q  115 atctataaactaatataaaa-gttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaattacaaaattgttgag 203  Q
    ||||||| |||||||||||| |||||||||| |||| ||||||||||||| ||||| ||| |||||||||||||||||||| | ||||||    
T  49146211 atctatatactaatataaaaagttaatgtccattgattttaccattttgcccctatgaggggcaatttggtaaattacaaattggttgag 49146122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 137 - 203
Target Start/End: Original strand, 9143497 - 9143563
Alignment:
Q  137 taatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaattacaaaattgttgag 203  Q
    |||| |||||||||||||||||||||| ||||||||| ||||||||||||||||| || ||||||||    
T  9143497 taatatcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaatttgttgag 9143563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 39276635 - 39276700
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaattacaaaattgttgag 203  Q
    |||||||||||||||||||||||||| ||||||| | | |||||||||||||||||| ||||||||    
T  39276635 aatgtcccttgaatttaccattttgcccctataaagggtaatttggtaaattacaaatttgttgag 39276700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 11840512 - 11840460
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaatta 190  Q
    ||||||| |||||||||||||||||| ||||||||| ||||||||||||||||    
T  11840512 aatgtccattgaatttaccattttgcccctataaggggcaatttggtaaatta 11840460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 21601035 - 21600983
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaatta 190  Q
    ||||||| |||||||||||||||||| ||||||||| ||||||||||||||||    
T  21601035 aatgtccattgaatttaccattttgcccctataaggggcaatttggtaaatta 21600983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 29467773 - 29467821
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  29467773 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 29467821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 24684704 - 24684650
Alignment:
Q  132 aaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||||||||||| |||||||||||||||||  |||||||| ||||||||||||    
T  24684704 aaagttaatgtcccatgaatttaccattttgcctctataaggggcaatttggtaa 24684650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 21670857 - 21670792
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaattacaaaattgttgag 203  Q
    |||||||||||||||||| ||||||| ||||||| |   |||||||||||||||||| ||||||||    
T  21670857 aatgtcccttgaatttactattttgcccctataaaggataatttggtaaattacaaatttgttgag 21670792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 39651213 - 39651160
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaattac 191  Q
    ||||||| |||||||||||||||||| ||||| ||| |||||||||||||||||    
T  39651213 aatgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattac 39651160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 35157060 - 35157012
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||| ||||||||||||||||||| ||||||||| ||||||||||||    
T  35157060 aatgtcacttgaatttaccattttgcccctataaggggcaatttggtaa 35157012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 44804542 - 44804590
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||||||||||||||||||||||  ||||||||| ||||||||||||    
T  44804542 aatgtcccttgaatttaccattttgtccctataaggggcaatttggtaa 44804590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 186
Target Start/End: Complemental strand, 29684193 - 29684130
Alignment:
Q  123 actaatataaaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    ||||||||||||   ||||| |||||||||||||||||| | ||||||||| ||||||||||||    
T  29684193 actaatataaaaagaaatgtgccttgaatttaccattttacccctataaggggcaatttggtaa 29684130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 17169046 - 17169098
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaatta 190  Q
    ||||||| |||||||||||||||||| ||||| | | ||||||||||||||||    
T  17169046 aatgtcctttgaatttaccattttgcccctattaagggcaatttggtaaatta 17169098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 31900058 - 31899998
Alignment:
Q  130 taaaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaatta 190  Q
    |||||| |||||||| |||||||||| ||||||| ||||| ||| ||||||||||| ||||    
T  31900058 taaaaggtaatgtcctttgaatttacaattttgcccctattaggggcaatttggtagatta 31899998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 163
Target Start/End: Original strand, 46197427 - 46197464
Alignment:
Q  126 aatataaaagttaatgtcccttgaatttaccattttgc 163  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  46197427 aatataaaagttaatgtccattgattttaccattttgc 46197464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 186
Target Start/End: Original strand, 3791513 - 3791549
Alignment:
Q  150 atttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  3791513 atttaccattttgcccctataaggggcaatttggtaa 3791549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 34872191 - 34872239
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    ||||||| ||||| |||||||||||  ||||||||| ||||||||||||    
T  34872191 aatgtcctttgaacttaccattttgtccctataaggggcaatttggtaa 34872239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 48529998 - 48529946
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaatta 190  Q
    ||||||| ||||| |||||||||||| |||||  || ||||||||||||||||    
T  48529998 aatgtcctttgaaattaccattttgcccctattgggggcaatttggtaaatta 48529946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 5752471 - 5752538
Alignment:
Q  136 ttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaattacaaaattgttgag 203  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  5752471 ttaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaaattgttgag 5752538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 203
Target Start/End: Complemental strand, 12682843 - 12682755
Alignment:
Q  115 atctataaactaatataaaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaattacaaaattgttgag 203  Q
    ||||||| |||||||||||||||||||||| |||| ||||||||||||| ||||| ||| |||||||||||||||| ||| | ||||||    
T  12682843 atctatatactaatataaaagttaatgtccattgattttaccattttgcccctatgaggggcaatttggtaaattataaattggttgag 12682755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 115 - 191
Target Start/End: Complemental strand, 3821286 - 3821210
Alignment:
Q  115 atctataaactaatataaaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaattac 191  Q
    ||||||| ||| |||| |||  ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  3821286 atctatatacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattac 3821210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 46104186 - 46104266
Alignment:
Q  123 actaatataaaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaattacaaaattgttgag 203  Q
    |||||||||||||||||||||| |||| ||||||||||||| || || ||| |||||||||||||||||||| | ||||||    
T  46104186 actaatataaaagttaatgtccattgattttaccattttgccccaatgaggggcaatttggtaaattacaaattggttgag 46104266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 8956932 - 8956986
Alignment:
Q  132 aaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||    
T  8956932 aaagttaatgtcccatgaatttaccattttgcccctataaggggcaatttggtaa 8956986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 8986904 - 8986958
Alignment:
Q  132 aaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||    
T  8986904 aaagttaatgtcccatgaatttaccattttgcccctataaggggcaatttggtaa 8986958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 37349802 - 37349856
Alignment:
Q  132 aaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||    
T  37349802 aaagttaatgtcccatgaatttaccattttgcccctataaggggcaatttggtaa 37349856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 114 - 183
Target Start/End: Complemental strand, 24948375 - 24948306
Alignment:
Q  114 tatctataaactaatataaaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttgg 183  Q
    |||||||| ||| ||||||||   ||||||| |||||||||||||||||||||||||||| |||||||||    
T  24948375 tatctatatacttatataaaaagaaatgtcctttgaatttaccattttgctcctataaggggcaatttgg 24948306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 203
Target Start/End: Original strand, 2116088 - 2116176
Alignment:
Q  115 atctataaactaatataaaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaattacaaaattgttgag 203  Q
    ||||||| |||||||||||||||||||||| |||| ||||||||||||  | ||  ||| |||||||||||||||| ||| | ||||||    
T  2116088 atctatatactaatataaaagttaatgtccattgattttaccattttgtccttaggaggggcaatttggtaaattataaattggttgag 2116176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 13171647 - 13171695
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  13171647 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 13171695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 50120022 - 50119974
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  50120022 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 50119974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 51347510 - 51347558
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  51347510 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 51347558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 9888960 - 9888906
Alignment:
Q  132 aaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||||||||||| ||||||||||||||||| |||||||||  |||||||||||    
T  9888960 aaagttaatgtcccatgaatttaccattttgcccctataagggtcaatttggtaa 9888906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 128 - 186
Target Start/End: Complemental strand, 35833488 - 35833430
Alignment:
Q  128 tataaaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    ||||||||||||||||| |||| ||||||||||||| ||||| ||| ||||||||||||    
T  35833488 tataaaagttaatgtccattgattttaccattttgcccctatgaggggcaatttggtaa 35833430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 146 - 186
Target Start/End: Original strand, 17730463 - 17730503
Alignment:
Q  146 ttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  17730463 ttgaatttaccattttgctcctataaggggcaatttggtaa 17730503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 24547353 - 24547401
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||||||||||||||||||||||  ||||||||| ||||||||||||    
T  24547353 aatgtcccttgaatttaccattttgtccctataaggggcaatttggtaa 24547401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 29712392 - 29712440
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||||||| ||||||||||||||| ||||||||| ||||||||||||    
T  29712392 aatgtcccttaaatttaccattttgcccctataaggggcaatttggtaa 29712440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 30529339 - 30529295
Alignment:
Q  142 tcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||    
T  30529339 tcccttgaatttaccattttgcccctataaggggcaatttggtaa 30529295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 39716782 - 39716730
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaatta 190  Q
    ||||||| |||||||||||||||||| ||||| ||| ||||||||||||||||    
T  39716782 aatgtcctttgaatttaccattttgcccctattaggggcaatttggtaaatta 39716730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 191
Target Start/End: Complemental strand, 35498619 - 35498544
Alignment:
Q  116 tctataaactaatataaaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaattac 191  Q
    |||||| ||||||||||||   |||| |||||||||||| |||||||| ||||||| |  ||||||||||||||||    
T  35498619 tctatatactaatataaaaagaaatggcccttgaatttatcattttgcccctataaaggacaatttggtaaattac 35498544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 186
Target Start/End: Complemental strand, 39406321 - 39406248
Alignment:
Q  113 atatctataaactaatataaaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    ||||||||| ||| ||||||||   ||||| ||||||||||||||||| || ||||||||| | ||||||||||    
T  39406321 atatctatatacttatataaaaagaaatgttccttgaatttaccatttagcccctataaggggtaatttggtaa 39406248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 186
Target Start/End: Original strand, 3757756 - 3757796
Alignment:
Q  146 ttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||||||||||||||| ||||||||| ||||||||||||    
T  3757756 ttgaatttaccattttgcccctataaggggcaatttggtaa 3757796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 15704122 - 15704186
Alignment:
Q  127 atataaaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaattac 191  Q
    ||||||||  |||||| | || ||||||||||||||| ||||||||| | |||||||||||||||    
T  15704122 atataaaaagtaatgttctttaaatttaccattttgcccctataaggggaaatttggtaaattac 15704186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 20588584 - 20588632
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    ||||||||||||||| ||||||||||  |||||||| ||||||||||||    
T  20588584 aatgtcccttgaattcaccattttgcctctataaggggcaatttggtaa 20588632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 170
Target Start/End: Complemental strand, 47560305 - 47560251
Alignment:
Q  116 tctataaactaatataaaagttaatgtcccttgaatttaccattttgctcctata 170  Q
    |||||| ||| |||| |||  ||||||||||||||||||||||||||| ||||||    
T  47560305 tctatatacttatattaaaagtaatgtcccttgaatttaccattttgcccctata 47560251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 50033697 - 50033750
Alignment:
Q  132 aaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||||||||||  ||||||||||||||||| | ||||||| ||||||||||||    
T  50033697 aaagttaatgtcctatgaatttaccattttgcccttataagg-gcaatttggtaa 50033750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 35716351 - 35716315
Alignment:
Q  150 atttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  35716351 atttaccattttgcccctataaggggcaatttggtaa 35716315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 36743266 - 36743218
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||||||| ||||||||||||||   |||||||| ||||||||||||    
T  36743266 aatgtcccttaaatttaccattttgtctctataaggggcaatttggtaa 36743218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 52799047 - 52799099
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaatta 190  Q
    ||||||| || ||||||||||||| | ||||| ||| ||||||||||||||||    
T  52799047 aatgtcctttaaatttaccattttacccctattaggggcaatttggtaaatta 52799099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 53991604 - 53991568
Alignment:
Q  150 atttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  53991604 atttaccattttgcccctataaggggcaatttggtaa 53991568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 113 - 203
Target Start/End: Original strand, 62059 - 62149
Alignment:
Q  113 atatctataaactaatataaaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaattacaaaattgttgag 203  Q
    ||||||||| |||||||||||||||||||||| |||| ||||||||||||| ||||| ||| |||||||||||||||||||| | ||||||    
T  62059 atatctatatactaatataaaagttaatgtccattgattttaccattttgcccctatgaggggcaatttggtaaattacaaattggttgag 62149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 115 - 191
Target Start/End: Original strand, 16300388 - 16300464
Alignment:
Q  115 atctataaactaatataaaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaattac 191  Q
    ||||||| ||| |||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  16300388 atctatatacttatattaaaattaatgtcccttgaatttaccattttgctcctataaggggcaatttggtaaattac 16300464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 114 - 191
Target Start/End: Original strand, 47134702 - 47134779
Alignment:
Q  114 tatctataaactaatataaaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaattac 191  Q
    |||||||| ||| ||||||||| |||||||| |||||||||||||||||| ||||||||| |||||||||||||||||    
T  47134702 tatctatatacttatataaaaggtaatgtccattgaatttaccattttgcccctataaggggcaatttggtaaattac 47134779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 5426223 - 5426303
Alignment:
Q  123 actaatataaaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaattacaaaattgttgag 203  Q
    |||||||||| ||||||||||| |||| ||||||||||||| | || |||| |||||||||||||||||||| | ||||||    
T  5426223 actaatataacagttaatgtccattgattttaccattttgcccttagaaggggcaatttggtaaattacaaattggttgag 5426303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 114 - 185
Target Start/End: Complemental strand, 19322433 - 19322362
Alignment:
Q  114 tatctataaactaatataaaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggta 185  Q
    |||||||| |||||||  ||| | |||||||||||||||||||||||||| ||||||||| |||||||||||    
T  19322433 tatctatatactaataagaaaataaatgtcccttgaatttaccattttgcccctataaggggcaatttggta 19322362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 115 - 186
Target Start/End: Original strand, 38894754 - 38894825
Alignment:
Q  115 atctataaactaatataaaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    ||||||| |||||||  ||||| ||||||| |||||||||||||||||| ||||||||| ||||||||||||    
T  38894754 atctatatactaataagaaagtaaatgtccattgaatttaccattttgcccctataaggggcaatttggtaa 38894825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 33075721 - 33075673
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  33075721 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 33075673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 46626389 - 46626341
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  46626389 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 46626341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 28570741 - 28570795
Alignment:
Q  132 aaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||||||||||| ||||||||||||||||| |||||||||  |||||||||||    
T  28570741 aaagttaatgtcccatgaatttaccattttgcccctataagggtcaatttggtaa 28570795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 191
Target Start/End: Original strand, 52306067 - 52306144
Alignment:
Q  114 tatctataaactaatataaaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaattac 191  Q
    |||||||| ||| ||||||||   ||| |||||| ||||||||||||||| ||||||||| |||||||| ||||||||    
T  52306067 tatctatatacttatataaaaagaaatatccctttaatttaccattttgcccctataaggggcaatttgataaattac 52306144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 1367313 - 1367365
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaatta 190  Q
    ||||||| |||||||||||||||||| ||||| ||| ||||||||||||||||    
T  1367313 aatgtcctttgaatttaccattttgcccctattaggggcaatttggtaaatta 1367365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 102 - 190
Target Start/End: Complemental strand, 17364704 - 17364616
Alignment:
Q  102 gtcaaatgtttatatctataaactaatataaaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaatta 190  Q
    |||||||| || |||||||| ||| |||| |||   ||| ||| |||||||||||||||||| ||||| ||| ||||||||||||||||    
T  17364704 gtcaaatgcttctatctatatacttatattaaaagaaatatcctttgaatttaccattttgcccctattaggggcaatttggtaaatta 17364616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 22198972 - 22198924
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    ||||||||||||||||| |||||||| ||||||||| ||||||||||||    
T  22198972 aatgtcccttgaatttatcattttgcccctataaggggcaatttggtaa 22198924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 186
Target Start/End: Original strand, 1826792 - 1826863
Alignment:
Q  115 atctataaactaatataaaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    ||||||| ||| |||| |||  ||||||||||||||||||||||||||   |||||||| ||||||||||||    
T  1826792 atctatatacttatattaaaagtaatgtcccttgaatttaccattttggctctataaggggcaatttggtaa 1826863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 186
Target Start/End: Complemental strand, 29844972 - 29844898
Alignment:
Q  112 tatatctataaactaatataaaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||||||| ||| |||| |||   |||||||| || |||||||||||||| ||||||||| ||||||||||||    
T  29844972 tatatctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggcaatttggtaa 29844898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 4890120 - 4890172
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaatta 190  Q
    ||||||| ||||||||||||||||||  |||| ||| ||||||||||||||||    
T  4890120 aatgtcctttgaatttaccattttgcctctattaggggcaatttggtaaatta 4890172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 29188365 - 29188313
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaatta 190  Q
    ||||||| |||||||||||||||||| ||||| | | ||||||||||||||||    
T  29188365 aatgtcctttgaatttaccattttgcccctattaagggcaatttggtaaatta 29188313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 33359722 - 33359774
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaatta 190  Q
    ||||||| |||||||||||||||||| ||||| | | ||||||||||||||||    
T  33359722 aatgtcctttgaatttaccattttgcccctattaagggcaatttggtaaatta 33359774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 186
Target Start/End: Original strand, 50557850 - 50557896
Alignment:
Q  139 atgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    ||||||| |||||||||||||||| |||||||||| ||||||||||||    
T  50557850 atgtcccatgaatttaccattttg-tcctataaggggcaatttggtaa 50557896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 123 - 198
Target Start/End: Complemental strand, 25616578 - 25616503
Alignment:
Q  123 actaatataaaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaattacaaaattg 198  Q
    |||||||||||||||||||||| |||| ||||||||||||| | ||  ||| ||||||||||||||||||||||||    
T  25616578 actaatataaaagttaatgtccattgattttaccattttgcccttaagaggggcaatttggtaaattacaaaattg 25616503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 41972965 - 41973026
Alignment:
Q  125 taatataaaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||||||| | |||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  41972965 taatataaaattaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 41973026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 115 - 203
Target Start/End: Complemental strand, 4466508 - 4466420
Alignment:
Q  115 atctataaactaatataaaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaattacaaaattgttgag 203  Q
    ||||||| |||||||||||||||||||||| |||| ||||||||||| | | ||  ||| |||||||||||||||||||| | ||||||    
T  4466508 atctatatactaatataaaagttaatgtccattgattttaccattttacccttaggaggggcaatttggtaaattacaaattggttgag 4466420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 7389205 - 7389285
Alignment:
Q  123 actaatataaaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaattacaaaattgttgag 203  Q
    |||||||||||||||||||||| |||| ||||||||||||| || |  ||| |||||||||||||||||||| | ||||||    
T  7389205 actaatataaaagttaatgtccattgattttaccattttgccccaaggaggggcaatttggtaaattacaaattggttgag 7389285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 24053936 - 24053984
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  24053936 aatgtcccttgaatttaccattttgctcctataaggggcaatttggtaa 24053984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 203
Target Start/End: Complemental strand, 25620801 - 25620714
Alignment:
Q  116 tctataaactaatataaaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaattacaaaattgttgag 203  Q
    |||||| ||| ||||||||||| |||||| |||| ||||| ||||||| ||||| ||| |||||||||||||||||||| | ||||||    
T  25620801 tctatacactgatataaaagttcatgtccattgattttactattttgcccctatgaggggcaatttggtaaattacaaattagttgag 25620714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 8760717 - 8760771
Alignment:
Q  132 aaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||    
T  8760717 aaagttaatgtcccatgaatttaccattttgcccctataaggggcaatttggtaa 8760771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 25836336 - 25836282
Alignment:
Q  132 aaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||    
T  25836336 aaagttaatgtcccatgaatttaccattttgcccctataaggggcaatttggtaa 25836282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 36776426 - 36776474
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  36776426 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 36776474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 139 - 186
Target Start/End: Complemental strand, 40616158 - 40616111
Alignment:
Q  139 atgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||    
T  40616158 atgtcccttgaatttaccattttgctcctataagaggcaatttggtaa 40616111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 1942805 - 1942859
Alignment:
Q  132 aaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||||||||||| |||||||||||||||||  |||||||| ||||||||||||    
T  1942805 aaagttaatgtcccatgaatttaccattttgcctctataaggggcaatttggtaa 1942859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 8162846 - 8162792
Alignment:
Q  132 aaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||||||||||| ||||||||||||||||| |||||||||  |||||||||||    
T  8162846 aaagttaatgtcccatgaatttaccattttgcccctataagggtcaatttggtaa 8162792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 40587757 - 40587709
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    ||||||| |||||||||||||||||| ||||||||| ||||||||||||    
T  40587757 aatgtccattgaatttaccattttgcccctataaggggcaatttggtaa 40587709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 41534313 - 41534261
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaatta 190  Q
    |||||||| |||||||||||||||||||||||||||  ||||||| |||||||    
T  41534313 aatgtcccatgaatttaccattttgctcctataagggacaatttgataaatta 41534261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 32844165 - 32844219
Alignment:
Q  132 aaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||||||||||| | ||||||||||||||| || |||||| ||||||||||||    
T  32844165 aaagttaatgtcccataaatttaccattttgccccgataaggggcaatttggtaa 32844219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 25346056 - 25346104
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    ||||||| ||||||||||||||||||  |||||||| ||||||||||||    
T  25346056 aatgtccattgaatttaccattttgcctctataaggggcaatttggtaa 25346104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 186
Target Start/End: Original strand, 45435013 - 45435060
Alignment:
Q  139 atgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    ||||| ||||||||||||||||||| | ||||||| ||||||||||||    
T  45435013 atgtcacttgaatttaccattttgcccttataaggggcaatttggtaa 45435060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 9472174 - 9472221
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    ||||||||||||| ||||||||||||  |||||||| ||||||||||||    
T  9472174 aatgtcccttgaaattaccattttgcctctataagg-gcaatttggtaa 9472221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 18378867 - 18378815
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaatta 190  Q
    ||||||| ||||||||| ||||||||  |||| ||| ||||||||||||||||    
T  18378867 aatgtcctttgaatttatcattttgcctctattaggggcaatttggtaaatta 18378815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 162
Target Start/End: Original strand, 41152666 - 41152714
Alignment:
Q  114 tatctataaactaatataaaagttaatgtcccttgaatttaccattttg 162  Q
    |||||||| ||| ||||||||   |||||||||||||||||||||||||    
T  41152666 tatctatatacttatataaaaagaaatgtcccttgaatttaccattttg 41152714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 112 - 203
Target Start/End: Original strand, 28607217 - 28607308
Alignment:
Q  112 tatatctataaactaatataaaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaattacaaaattgttgag 203  Q
    |||||||||| ||| |||| ||| | ||||||| |||||||||||||||||  ||||||||| |||||||||||||||||||| | ||||||    
T  28607217 tatatctatatacttatattaaaataaatgtccattgaatttaccattttgtccctataaggggcaatttggtaaattacaaattggttgag 28607308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 112 - 191
Target Start/End: Original strand, 24520862 - 24520941
Alignment:
Q  112 tatatctataaactaatataaaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaattac 191  Q
    |||||||||| ||| ||||||||   |||||||||||||||||  |||||||  ||||||||||||||||||||||||||    
T  24520862 tatatctatatacttatataaaaagaaatgtcccttgaatttataattttgcctctataaggagcaatttggtaaattac 24520941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 115 - 186
Target Start/End: Complemental strand, 32677271 - 32677200
Alignment:
Q  115 atctataaactaatataaaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    ||||||| ||| |||| ||| | |||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  32677271 atctatatacttatattaaaataaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 32677200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 17836989 - 17837037
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  17836989 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 17837037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 19486211 - 19486259
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  19486211 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 19486259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 2952779 - 2952831
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaatta 190  Q
    ||||||| |||||||||||||||||| ||||| ||| ||||||||||||||||    
T  2952779 aatgtcctttgaatttaccattttgcccctattaggggcaatttggtaaatta 2952831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 4292847 - 4292795
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaatta 190  Q
    ||||||| |||||||||||||||||||||||| | | ||||||||||||||||    
T  4292847 aatgtcctttgaatttaccattttgctcctattaagggcaatttggtaaatta 4292795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 9545840 - 9545788
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaatta 190  Q
    ||||||| |||||||||||||||||| ||||| ||| ||||||||||||||||    
T  9545840 aatgtcctttgaatttaccattttgcccctattaggggcaatttggtaaatta 9545788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 10050254 - 10050201
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaattac 191  Q
    ||||||| |||||||||||||||||| ||||| ||| |||||||| ||||||||    
T  10050254 aatgtcctttgaatttaccattttgcccctattaggggcaatttgataaattac 10050201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 9920974 - 9920926
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||||| || |||||||||||||| ||||||||| ||||||||||||    
T  9920974 aatgtcccatggatttaccattttgcccctataaggggcaatttggtaa 9920926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 18096513 - 18096565
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaatta 190  Q
    ||||||| |||||||||||||||||| ||||||||| | ||||||| ||||||    
T  18096513 aatgtcctttgaatttaccattttgcccctataaggggtaatttggcaaatta 18096565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 19486187 - 19486128
Alignment:
Q  127 atataaaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||||||  ||| ||| ||||||||| |||||||| ||||||||| ||||||||||||    
T  19486187 atataaaagaaaatatccattgaatttatcattttgcccctataaggggcaatttggtaa 19486128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 10876634 - 10876588
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||||||||||||||||||||||| ||  ||||| ||||||||||||    
T  10876634 aatgtcccttgaatttaccattttgcccc--taaggggcaatttggtaa 10876588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 42781033 - 42781081
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    ||||||||||||||||| |||||||  ||| ||||| ||||||||||||    
T  42781033 aatgtcccttgaatttatcattttgtccctgtaaggggcaatttggtaa 42781081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 116 - 190
Target Start/End: Complemental strand, 3088118 - 3088044
Alignment:
Q  116 tctataaactaatataaaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaatta 190  Q
    |||||| ||| |||| |||  ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  3088118 tctatatacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaatta 3088044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 6305520 - 6305466
Alignment:
Q  132 aaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||    
T  6305520 aaagttaatgtcccatgaatttaccattttgcccctataaggggcaatttggtaa 6305466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 116 - 190
Target Start/End: Complemental strand, 33709900 - 33709826
Alignment:
Q  116 tctataaactaatataaaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaatta 190  Q
    |||||| ||| |||| ||| |||||||||||||||||||||||||| | ||||||| | ||||||||||||||||    
T  33709900 tctatatacttatattaaaattaatgtcccttgaatttaccattttacccctataaagggcaatttggtaaatta 33709826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 43138617 - 43138563
Alignment:
Q  132 aaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||    
T  43138617 aaagttaatgtcccatgaatttaccattttgcccctataaggggcaatttggtaa 43138563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 36887033 - 36886985
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  36887033 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 36886985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 123 - 186
Target Start/End: Complemental strand, 12422424 - 12422361
Alignment:
Q  123 actaatataaaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||||||||| || |||||| |||| ||||||||||||| ||||||||| ||||||||||||    
T  12422424 actaatataaaaattcatgtcctttgattttaccattttgcccctataaggggcaatttggtaa 12422361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 754515 - 754461
Alignment:
Q  132 aaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||||||||||| ||||||||||||||||| |||||||||  |||||||||||    
T  754515 aaagttaatgtcccatgaatttaccattttgcccctataagggtcaatttggtaa 754461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 112 - 186
Target Start/End: Complemental strand, 17643476 - 17643402
Alignment:
Q  112 tatatctataaactaatataaaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||||||| |||||||  ||| | ||||||||||||||||| |||||||| | ||||||| ||||||||||||    
T  17643476 tatatctatatactaataagaaaataaatgtcccttgaatttatcattttgcccttataaggggcaatttggtaa 17643402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 116 - 198
Target Start/End: Complemental strand, 34727422 - 34727340
Alignment:
Q  116 tctataaactaatataaaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaattacaaaattg 198  Q
    |||||| |||||||||||||||||||||| |||| ||||||||||||    || |||  |||||||| |||||||||||||||    
T  34727422 tctatatactaatataaaagttaatgtccattgattttaccattttgtctttagaagaggcaatttgataaattacaaaattg 34727340  T

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Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 25698782 - 25698730
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaatta 190  Q
    ||||||| |||||||||||||||||| ||||| ||| ||||||||||||||||    
T  25698782 aatgtcctttgaatttaccattttgcccctattaggggcaatttggtaaatta 25698730  T

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Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 30754431 - 30754479
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    ||||||| |||||||||||||||||| ||||||||| ||||||||||||    
T  30754431 aatgtcctttgaatttaccattttgcccctataaggggcaatttggtaa 30754479  T

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Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 41689297 - 41689349
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaatta 190  Q
    ||||||| |||||||||||||||||| ||||| | | ||||||||||||||||    
T  41689297 aatgtcctttgaatttaccattttgcccctattatgggcaatttggtaaatta 41689349  T

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Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 186
Target Start/End: Complemental strand, 12592556 - 12592485
Alignment:
Q  115 atctataaactaatataaaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    ||||||| ||| ||||||||   |||||||| ||||||||||| ||| | ||||||||| ||||||||||||    
T  12592556 atctatatacttatataaaaagaaatgtcccatgaatttaccagtttacccctataaggggcaatttggtaa 12592485  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 191
Target Start/End: Original strand, 30140524 - 30140577
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaattac 191  Q
    ||||||| |||||||||||||||||| ||||| | | | |||||||||||||||    
T  30140524 aatgtcctttgaatttaccattttgcccctattaagggtaatttggtaaattac 30140577  T

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Target: scaffold0009 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 191
Target Start/End: Original strand, 225457 - 225510
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaattac 191  Q
    ||||||| |||||||||||||||||| ||||||||| |||||||||||||||||    
T  225457 aatgtccattgaatttaccattttgcccctataaggggcaatttggtaaattac 225510  T

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Target: scaffold0009; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 108569 - 108617
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||||||||||||||||||||||  || |||||| | ||||||||||    
T  108569 aatgtcccttgaatttaccattttgtccccataaggggtaatttggtaa 108617  T

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Target: scaffold0381 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 9585 - 9639
Alignment:
Q  132 aaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||||||||||| ||||||||||||||||| |||||||||  |||||||||||    
T  9585 aaagttaatgtcccatgaatttaccattttgcccctataagggtcaatttggtaa 9639  T

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Target: scaffold0057 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 190
Target Start/End: Complemental strand, 20669 - 20592
Alignment:
Q  113 atatctataaactaatataaaagttaatgtcccttgaatttaccattttgctcctataaggagcaatttggtaaatta 190  Q
    ||||||||| ||| |||| |||   ||||||| |||||||||||||||||| ||||| ||| ||||||||||||||||    
T  20669 atatctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaaatta 20592  T

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Target: scaffold0385 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 8365 - 8317
Alignment:
Q  138 aatgtcccttgaatttaccattttgctcctataaggagcaatttggtaa 186  Q
    |||||||| ||||||||||||||||| ||||||||| ||||||||||||    
T  8365 aatgtcccatgaatttaccattttgcccctataaggggcaatttggtaa 8317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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