View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19602_low_5 (Length: 521)
Name: NF19602_low_5
Description: NF19602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19602_low_5 |
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| [»] scaffold0999 (1 HSPs) |
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Alignment Details
Target: scaffold0999 (Bit Score: 141; Significance: 1e-73; HSPs: 1)
Name: scaffold0999
Description:
Target: scaffold0999; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 409 - 731
Alignment:
| Q |
1 |
ataaaaggacccaaaaagaccccatgggagacccttccaccaagaatatcaaacacgattaccacccatgtaagctaggaagatttacaggaccacgaga |
100 |
Q |
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| T |
409 |
ataaaaggccccaacaagaccc-atgggagagcctcccaccaagaatatacaacacaattactacctaaggaagctaggaagatttacaggaccacgaca |
507 |
T |
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| Q |
101 |
atcgcagatgctccacaattcattaattacaatatcttagttcaatcattcccttaacattccttcaaaataaccaacaacgtgagaaagtttagtgcat |
200 |
Q |
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| T |
508 |
atcccagacgccccacaattcttcaattacaatatcttagttaaatctatatcttaacattcctccaaaataacaaacaaagtgagaaagtttagtgcat |
607 |
T |
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| Q |
201 |
aattttttcatattcactctcaacgtttagaactaccacttataccataatcattttcaactcattcctacacatttgttaatttcactcaatctatgag |
300 |
Q |
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| T |
608 |
aa-tttttcacatttactctcaacgtttataaattccactcatcccataatcattttctactcatttctacacatatgttaatttcacttaaactttgag |
706 |
T |
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| Q |
301 |
tgtttccaacatggtattcactact |
325 |
Q |
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| T |
707 |
tatttctaacgtggtgttcactact |
731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 1e-60; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 373 - 507
Target Start/End: Original strand, 13191316 - 13191450
Alignment:
| Q |
373 |
atttgggtacgctgcttattgttgagctttcgataattcgggaaagcatctcggctccaggaggaaatgtcttctgcacaataattaagtttagtaataa |
472 |
Q |
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| T |
13191316 |
atttgggtacgctgcttattgatgagctttcgataattcgggaaagcgtctcggctccaggaggaaatgtcttctgcacaataattaagtttagtaataa |
13191415 |
T |
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| Q |
473 |
cattggaagaagggtagtgaccccatgttacttct |
507 |
Q |
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| T |
13191416 |
gattggaagaagggtagtgaccccatgttgcttct |
13191450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 72 - 186
Target Start/End: Complemental strand, 13132461 - 13132347
Alignment:
| Q |
72 |
aagctaggaagatttacaggaccacgagaatcgcagatgctccacaattcattaattacaatatcttagttcaatcattcccttaacattccttcaaaat |
171 |
Q |
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| T |
13132461 |
aagctagaaagatttataggaccacgcgaatcgtagaggctccacaattctttaattacagtatcataattgaatctatcccataacattcctccaaaat |
13132362 |
T |
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| Q |
172 |
aaccaacaacgtgag |
186 |
Q |
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| T |
13132361 |
aacctacaaagtgag |
13132347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 272 - 327
Target Start/End: Complemental strand, 13131798 - 13131743
Alignment:
| Q |
272 |
acatttgttaatttcactcaatctatgagtgtttccaacatggtattcactactag |
327 |
Q |
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| T |
13131798 |
acatatgttaatttcactcaatctttgagtgtttccgacgtggtaatcactactag |
13131743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 13132329 - 13132271
Alignment:
| Q |
150 |
tcccttaacattccttcaaaataaccaacaacgtgagaaagtttagtgcataatttttt |
208 |
Q |
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| T |
13132329 |
tcccataacattcctccaaaataacgtacaaagtgagaaagtttagagcataatttttt |
13132271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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