View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19602_low_6 (Length: 517)

Name: NF19602_low_6
Description: NF19602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19602_low_6
NF19602_low_6
[»] chr7 (3 HSPs)
chr7 (23-253)||(46482865-46483095)
chr7 (315-390)||(46483146-46483220)
chr7 (450-501)||(46483281-46483332)
[»] chr5 (1 HSPs)
chr5 (138-251)||(17415068-17415181)
[»] chr6 (1 HSPs)
chr6 (138-251)||(20409636-20409749)
[»] chr1 (1 HSPs)
chr1 (138-251)||(46312592-46312705)
[»] chr2 (2 HSPs)
chr2 (138-251)||(32898739-32898852)
chr2 (10-124)||(32898880-32898994)
[»] chr4 (1 HSPs)
chr4 (138-229)||(40169177-40169268)
[»] chr8 (1 HSPs)
chr8 (450-501)||(33564051-33564102)


Alignment Details
Target: chr7 (Bit Score: 171; Significance: 1e-91; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 23 - 253
Target Start/End: Original strand, 46482865 - 46483095
Alignment:
Q  23 ccgccttgaaaaggttgcaccgcggccgccgtggagaaaaagaaaggaagctggatattatcttgtagtgacctcaatctaggaaaatcagaaacatcga 122  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||| ||    
T  46482865 ccgccttgaaaatgttgcgccgcggccgccgtggagaaaaagaaaggaagctggagattatcttgtagtgacctcaatctaggaaaaatagaaacattga 46482964  T
Q  123 caacaagatacatatattgtagcattcatagaaggagaaacaagatcaaagcttccattgttgttgctgctgaagttgttgtcgacagagacaacatttg 222  Q
    |||||||||  | |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  46482965 caacaagatcgacatattgtaccattcgtagaaggagaaacaagatcaaagcttccattgttgttgctgctgaagttgttgtggacagagacaacatttg 46483064  T
Q  223 atgttgtagatgttgtggagaaacaggactg 253  Q
    ||||| ||||| ||||||||||| |||||||    
T  46483065 atgttctagatattgtggagaaataggactg 46483095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 315 - 390
Target Start/End: Original strand, 46483146 - 46483220
Alignment:
Q  315 attttgttaaagaacaacaagatgttgaaggaacaatgattatggtgacagtggaatttcaattggatgaaaaggg 390  Q
    ||||||||||||| ||| | ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  46483146 attttgttaaagatcaatatgatgttgaaggaaca-tgattatgatgacagtggaatttcaattggatgaaaaggg 46483220  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 450 - 501
Target Start/End: Original strand, 46483281 - 46483332
Alignment:
Q  450 gtgattggtatgaggaacttgagtttatttttctgggtttgtgattgttttg 501  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  46483281 gtgattggtataaggaacttgagtttatttttcttggtttgtgattgttttg 46483332  T

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Target: chr5 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 138 - 251
Target Start/End: Complemental strand, 17415181 - 17415068
Alignment:
Q  138 attgtagcattcatagaaggagaaacaagatcaaagcttccattgttgttgctgctgaagttgttgtcgacagagacaacatttgatgttgtagatgttg 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| | ||| ||||||||||||||||||||||||||    
T  17415181 attgtagcattcatagaaggagaaacaagatcaaagcttccattgttgttgttactgaagttgttgtgggcagcgacaacatttgatgttgtagatgttg 17415082  T
Q  238 tggagaaacaggac 251  Q
    ||||||||||||||    
T  17415081 tggagaaacaggac 17415068  T

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Target: chr6 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 138 - 251
Target Start/End: Original strand, 20409636 - 20409749
Alignment:
Q  138 attgtagcattcatagaaggagaaacaagatcaaagcttccattgttgttgctgctgaagttgttgtcgacagagacaacatttgatgttgtagatgttg 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| | ||  ||||||||||||||||||||||||||    
T  20409636 attgtagcattcatagaaggagaaacaagatcaaagcttccattgttgttgttactgaagttgttgtgggcaacgacaacatttgatgttgtagatgttg 20409735  T
Q  238 tggagaaacaggac 251  Q
    ||||||||||||||    
T  20409736 tggagaaacaggac 20409749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 138 - 251
Target Start/End: Complemental strand, 46312705 - 46312592
Alignment:
Q  138 attgtagcattcatagaaggagaaacaagatcaaagcttccattgttgttgctgctgaagttgttgtcgacagagacaacatttgatgttgtagatgttg 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| | ||  ||||||||||||||||||||||||||    
T  46312705 attgtagcattcatagaaggagaaacaagatcaaagcttccattgttgttgttactgaagttgttgtgggcaacgacaacatttgatgttgtagatgttg 46312606  T
Q  238 tggagaaacaggac 251  Q
    ||||||||||||||    
T  46312605 tggagaaacaggac 46312592  T

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Target: chr2 (Bit Score: 86; Significance: 7e-41; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 138 - 251
Target Start/End: Complemental strand, 32898852 - 32898739
Alignment:
Q  138 attgtagcattcatagaaggagaaacaagatcaaagcttccattgttgttgctgctgaagttgttgtcgacagagacaacatttgatgttgtagatgttg 237  Q
    ||||| |||||||||||||| |||||||||||||| ||||||||| |||||||| ||||||||||||  |||||||||||||||||||||||||||||||    
T  32898852 attgttgcattcatagaaggtgaaacaagatcaaaacttccattgctgttgctgttgaagttgttgtgaacagagacaacatttgatgttgtagatgttg 32898753  T
Q  238 tggagaaacaggac 251  Q
    ||||||||||||||    
T  32898752 tggagaaacaggac 32898739  T

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Target: chr2; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 10 - 124
Target Start/End: Complemental strand, 32898994 - 32898880
Alignment:
Q  10 aagaatatcaccaccgccttgaaaaggttgcaccgcggccgccgtggagaaaaagaaaggaagctggatattatcttgtagtgacctcaatctaggaaaa 109  Q
    ||||||||||||||| ||  ||||||| ||| ||||||| |||| ||||||||||||||||||||| | ||||||||||||||| ||||| |||||||||    
T  32898994 aagaatatcaccaccaccgggaaaaggctgcgccgcggcggccgaggagaaaaagaaaggaagctgaagattatcttgtagtgatctcaagctaggaaaa 32898895  T
Q  110 tcagaaacatcgaca 124  Q
     |||||||| |||||    
T  32898894 gcagaaacaccgaca 32898880  T

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Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 138 - 229
Target Start/End: Complemental strand, 40169268 - 40169177
Alignment:
Q  138 attgtagcattcatagaaggagaaacaagatcaaagcttccattgttgttgctgctgaagttgttgtcgacagagacaacatttgatgttgt 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| | ||| ||||||||||||||||||    
T  40169268 attgtagcattcatagaaggagaaacaagatcaaagcttccattgttgttgttactgaagttgttgtgggcagcgacaacatttgatgttgt 40169177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 450 - 501
Target Start/End: Complemental strand, 33564102 - 33564051
Alignment:
Q  450 gtgattggtatgaggaacttgagtttatttttctgggtttgtgattgttttg 501  Q
    ||||||| ||||||||||||||||||||||| ||||||||| || |||||||    
T  33564102 gtgattgttatgaggaacttgagtttattttactgggtttgagactgttttg 33564051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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