View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19603_high_20 (Length: 250)
Name: NF19603_high_20
Description: NF19603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19603_high_20 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 2014574 - 2014336
Alignment:
| Q |
14 |
attattcttctgaatcatacagcataaaccagattacaatgtcatttgttggtggaagatgattagttgaatttttcacaataattccacctttaaaagc |
113 |
Q |
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| T |
2014574 |
attattcttctgaatcatacagcataaaccagattacaatgtcatttgttggtggaagatgattagttgaatttttcacaataattccacctttaaaagc |
2014475 |
T |
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| Q |
114 |
atatatataggttcaatttttgtttctctttataactatttgtcatcttcagcactcacattcaaacaaaaactaatacttgtttccaga--agagnnnn |
211 |
Q |
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| T |
2014474 |
atatatataggttcaatttttgtttctctttataactatttgttatcttcagcactcacattcaaacaaaaactaatacttgtttccagaagagagaaaa |
2014375 |
T |
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| Q |
212 |
nnncacacaaatttagacatcatcatgtacaacctagtt |
250 |
Q |
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| T |
2014374 |
aaacacacaaatttagacatcatcatgtacaacctagtt |
2014336 |
T |
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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 40569177 - 40569243
Alignment:
| Q |
17 |
attcttctgaatcatacagcataaaccagattacaatgtcatttgttggtggaagatgattagttga |
83 |
Q |
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| T |
40569177 |
attcttctgaatcatatagcttaaaccagatttcgatgtcattgattggtggaagatgattggttga |
40569243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 40573778 - 40573844
Alignment:
| Q |
17 |
attcttctgaatcatacagcataaaccagattacaatgtcatttgttggtggaagatgattagttga |
83 |
Q |
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|||||| |||||| || ||| ||||||||||| | |||||||| |||||||||||||||||||||| |
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| T |
40573778 |
attcttatgaatcctatagcttaaaccagatttcgatgtcattgattggtggaagatgattagttga |
40573844 |
T |
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