View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19603_high_28 (Length: 220)
Name: NF19603_high_28
Description: NF19603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19603_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 1e-98; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 9 - 201
Target Start/End: Complemental strand, 50112144 - 50111951
Alignment:
| Q |
9 |
gacatcatcatcacaatcatctgagttaatttcccttgttattaattcaaacaatacttattactttaagctataaacattg-gctttctatcatttttc |
107 |
Q |
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| T |
50112144 |
gacattatcatcacaatcatctgagttaatttcccttgttattaattcaaacaatacttattactttaagctataaacattgcgctttctatcatttttc |
50112045 |
T |
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| Q |
108 |
ctttttgtgtggtggaatttatccatcttgtatctgttgcttactttaaaacttggtatactgatgctgctatactaatgtgtatttaggaaca |
201 |
Q |
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| T |
50112044 |
ctttttgtgtggtggaatttatccatcttgtatctgttgcttactttaaaacttggtatactgatgctgctatactaatgtgtatttaggaaca |
50111951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 101 - 182
Target Start/End: Original strand, 49107391 - 49107472
Alignment:
| Q |
101 |
atttttcctttttgtgtggtggaatttatccatcttgtatctgttgcttactttaaaacttggtatactgatgctgctatac |
182 |
Q |
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| T |
49107391 |
atttttcctttttgtgtggtggaattgatacatcttgtatctcttgcttactttaaaacttggtatactcatgctgctatac |
49107472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 102
Target Start/End: Original strand, 49107023 - 49107117
Alignment:
| Q |
9 |
gacatcatcatcacaatcatctgagttaatttcccttgttattaattcaaacaatacttattactttaagctataaacattg-gctttctatcat |
102 |
Q |
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| T |
49107023 |
gacattatcatcacaatcaattgagggaatttccatggttattaatccaaacaatatttattactctaagctacaaacattgccctttctatcat |
49107117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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