View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19603_high_5 (Length: 394)
Name: NF19603_high_5
Description: NF19603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19603_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 17 - 382
Target Start/End: Complemental strand, 8293913 - 8293547
Alignment:
| Q |
17 |
caatatgatgtggaagggatattcatattacacacataaaactaatagcagtaactcataactatataaaaacaacagaaacgtgtacattgcagaaact |
116 |
Q |
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| T |
8293913 |
caatatgatgtggaagggatattcatattacacacataaaactaatagcagtaactcataactatataaaaacaacagaaacgtgtacattgcagaaact |
8293814 |
T |
|
| Q |
117 |
gataatcaatttaatcgtcacgagagaaaacaatactaacctaactattaacatactaatattctacatttgttattnnnnnnntagcacctaaaccaga |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
8293813 |
gataatcaatttaatcgtcacgagagaaaacaatactaacctaactattaacatactaatattctacatttgttattaaaaaaatagcacctaaaccaga |
8293714 |
T |
|
| Q |
217 |
gatgcaattaattatatggagatcaaatgcacatgacacggacgctatacaaaacgcagcaacaaaatatctggaatcagagaaattaacacggaagaga |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8293713 |
gatgcaattaattatatggagatcaaatgcacatgacacggacgctatacaaaacgcagcaacaaaatatctggaatcagagaaattaacacggaagaga |
8293614 |
T |
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| Q |
317 |
agag-aaaaataaatggacacataagatttaccagtttcaatcaattgtaagcagctccacaggttc |
382 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
8293613 |
agagaaaaaataaatggacacataagatttaccagtttcagtcaattgtaagcagctccacaggttc |
8293547 |
T |
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