View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19603_low_1 (Length: 568)
Name: NF19603_low_1
Description: NF19603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19603_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 19 - 560
Target Start/End: Complemental strand, 39813176 - 39812635
Alignment:
| Q |
19 |
acttgaacatttcctgaggctagaaattccgttgtttcttgcattgtcatagcggtcagcaaagcgaatcccgaaactcttgcagtttgagggtctaatt |
118 |
Q |
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| T |
39813176 |
acttgaacatttcctgaggctagaaattccgttgtttcttgcattgtcatagcggtcagcaaagcgaatcccgaaactcttgcagtttgagggtctaatt |
39813077 |
T |
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| Q |
119 |
gaacagctttaattatcctttgaactatctcaatcaacttcttatcaggatctccattactgtcataggaatcaagtgctataacaatcaacctgcgcct |
218 |
Q |
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| T |
39813076 |
gaacagctttaattatcctttgaactatctcaatcaacttcttatcaggatctccattactgtcataggaatcaagtgctataacaatcaacctgcgcct |
39812977 |
T |
|
| Q |
219 |
tcgccttaatagagggtatttgtttgatacattatcaagcaacatgttctcatgatttgaaccagaatcttgcttccttatcttgcttaagacacgtttc |
318 |
Q |
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| T |
39812976 |
tcgccttaatagagggtatttgtttgatacattatcaagcaacatgttctcatgatttgaaccagaatcttgcttccttatcttgcttaagacacgtttc |
39812877 |
T |
|
| Q |
319 |
acttggtcttcgttactgccaccgcttgatgcagcaaattcaccatcaattgaaagcctaagtgacatgtcctgaacatccttaagtgaatcattgaaag |
418 |
Q |
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| T |
39812876 |
acttggtcttcgttactgccaccgcttgatgcagcaaattcaccatcaattgaaagcctaagtgacatgtcctgaacatccttaagtgaatcattgaaag |
39812777 |
T |
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| Q |
419 |
actcttcaacatctacatcatcttcagtagtagtagtttgccattgtggatgcctcattctacacgcatccacgcgtgtcaaataagttcggcagtgttc |
518 |
Q |
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| T |
39812776 |
actcttcaacatctacatcatcttcagtagtagtagtttgccattgtggatgcctcattctacacgcatccacgcgtgtcaaataagttcggcaatgttc |
39812677 |
T |
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| Q |
519 |
cggccacgagaaaaggtgtatattcttccaacctttgcttct |
560 |
Q |
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| T |
39812676 |
cggccacgagaaaaggtgtatattcttccaaccattgtttct |
39812635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 358 - 548
Target Start/End: Complemental strand, 15800825 - 15800635
Alignment:
| Q |
358 |
tcaccatcaattgaaagcctaagtgacatgtcctgaacatccttaagtgaatcattgaaagactcttcaacatctacatcatcttcagtagtagtagttt |
457 |
Q |
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| T |
15800825 |
tcaccatcaatagagagcctaagagacatgtcctgcacgtctttaagtgaatcattgaatgactggtcgacagttatatcgtctcctggagtagtagttt |
15800726 |
T |
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| Q |
458 |
gccattgtggatgcctcattctacacgcatccacgcgtgtcaaataagttcggcagtgttccggccacgagaaaaggtgtatattcttcca |
548 |
Q |
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| T |
15800725 |
gccattgtggatgcctcatcctgcaagccgcgactcgagtcaaataagtacgacagtgttcgggccacgagaataggtgtatattcttcca |
15800635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 79 - 239
Target Start/End: Complemental strand, 15801101 - 15800941
Alignment:
| Q |
79 |
aaagcgaatcccgaaactcttgcagtttgagggtctaattgaacagctttaattatcctttgaactatctcaatcaacttcttatcaggatctccattac |
178 |
Q |
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||||| ||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||| ||| | |||| |||||||||||| |||||||| |
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| T |
15801101 |
aaagcaaatcccgaaactcttgcagtttgagggtctagttgaacagctttaatgattctttgaattatttggatcatattcttatcaggagctccattat |
15801002 |
T |
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| Q |
179 |
tgtcataggaatcaagtgctataacaatcaacctgcgccttcgccttaatagagggtattt |
239 |
Q |
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| T |
15801001 |
catcgtacaaatcaaccgctataacaatcaacctccgccgtctcctcaatagaggatattt |
15800941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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