View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19603_low_12 (Length: 307)
Name: NF19603_low_12
Description: NF19603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19603_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 28 - 258
Target Start/End: Complemental strand, 22765450 - 22765218
Alignment:
| Q |
28 |
tattttgttgtttctgaggaagatcgcacgggaattgcccgggatcttcctcaggtgtggtggtgtgtg--atcttctttttcttcttgttgtgctttaa |
125 |
Q |
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| T |
22765450 |
tattttgttgtttctgaggaagatcgcacgggaattgcccgggatcttcctcaggtgtggtggtgtgtgtgatcttctttttcttcttgttgtgctttaa |
22765351 |
T |
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| Q |
126 |
tttatctttattgatataccacgcataacaaagaaacaaatgataacactgatcgcaaaggatttatcaccatcactgaattttctccgttgctggttga |
225 |
Q |
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| T |
22765350 |
tttatctttattgatataccacgcatagcaaagcaacaaatgataacactgatcgcaaaggatttatcaccatcactgaattttctccgttgctgattga |
22765251 |
T |
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| Q |
226 |
ttaaggtatcatttattagtttaccttcgaatt |
258 |
Q |
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| T |
22765250 |
ttaaggtatcatttattagtttaccttcaaatt |
22765218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 28 - 219
Target Start/End: Complemental strand, 33081287 - 33081095
Alignment:
| Q |
28 |
tattttgttgtttctgaggaagatcgcacgggaattgcccgggatcttcctcaggtgtggtggtgtgtg-atcttctttttcttcttgttgtgctttaat |
126 |
Q |
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| T |
33081287 |
tattttgttgtttctgaggaagatcgcacgggaattgcccgggatcttcctcaggtgtggtggtgtgtgtgtgatcttcttcttctcgttatgctttctt |
33081188 |
T |
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| Q |
127 |
ttatctttattgatataccacgcataacaaagaaacaaatgataacactgatcgcaaaggatttatcaccatcactgaattttctccgttgct |
219 |
Q |
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| T |
33081187 |
ttatctttattgacataccacgcatcacaaagaaacaaatcataacactgatcgtaaaggatttattactatcacaggattttctccattgct |
33081095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 42 - 248
Target Start/End: Complemental strand, 33095825 - 33095609
Alignment:
| Q |
42 |
tgaggaagatcgcacgggaattgcccgggatcttcctcaggtgtggtggtgtgtga---tcttctttttcttcttgttgtgctttaatttatctttattg |
138 |
Q |
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|||||||||||||| ||||||| ||||||||||||| | | |||||||||||||| | |||| ||||||| ||| |||||| ||||||||||||| |
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| T |
33095825 |
tgaggaagatcgcatgggaatttcccgggatcttcccctgctgtggtggtgtgtgtgtgtgatcttcttcttctggttatgctttcgtttatctttattg |
33095726 |
T |
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| Q |
139 |
atataccacgcataacaa-------agaaacaaatgataacactgatcgcaaaggatttatcaccatcactgaattttctccgttgctggttgattaagg |
231 |
Q |
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| T |
33095725 |
atataccacgcatcacaattcacaaagaaacaaattataacacttgccacaaaggatttatcactatcactggattttctacgttgttgactgaataagg |
33095626 |
T |
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| Q |
232 |
tatcatttattagttta |
248 |
Q |
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|||||||||||| |||| |
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| T |
33095625 |
tatcatttattacttta |
33095609 |
T |
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