View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19603_low_2 (Length: 451)
Name: NF19603_low_2
Description: NF19603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19603_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 16 - 278
Target Start/End: Complemental strand, 16908961 - 16908701
Alignment:
| Q |
16 |
atatcacaatgaattcagcagaagttgaatttcaaattatataaaaattccaattttaattgctttttgttcacctattaaaataatgaatttaagattt |
115 |
Q |
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| T |
16908961 |
atatcacaatgaattcagcagaagttgaatttcaaattatataaaa-ttccaattttaattgctttttgttcacctattaaaataatgaatttaagattt |
16908863 |
T |
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| Q |
116 |
tatgaaatttgaggtatccgagccataagggacacattcataaattttggtcagtgggacatgtttgcaaaccttattatatggtgaagcaattaattat |
215 |
Q |
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| T |
16908862 |
tatgaaatttgaggtatccgagccatgagggacacattcataaatttttgtcagtgggacatgtttgcaaaccttattatatggtgaagcaattaattat |
16908763 |
T |
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| Q |
216 |
gcatnnnnnnntacatgcatggtcaattcaataataaaatataaagtatggcaatttttgggg |
278 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16908762 |
gcat-aaaaaatacatgcatggtcaattcaataataaaatataaagtatggcaatttttgggg |
16908701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 327 - 429
Target Start/End: Complemental strand, 16908655 - 16908554
Alignment:
| Q |
327 |
tacttggactttatttttggtttgatttgatcagcttatttttatctcatgaaattggtttggtgcaatttagcttatttcctcgtatttctcatttcta |
426 |
Q |
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| T |
16908655 |
tacttggactttattgttggtttgatt-gatcagcttatttttatctcatgaaattggtttggtgcaatttagcttatttcctcgtatttctcatttcta |
16908557 |
T |
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| Q |
427 |
gac |
429 |
Q |
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||| |
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| T |
16908556 |
gac |
16908554 |
T |
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