View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19603_low_25 (Length: 228)
Name: NF19603_low_25
Description: NF19603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19603_low_25 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 55091822 - 55092049
Alignment:
| Q |
1 |
atttcaactgcttcaaagaaactcaaagcttttcaactcgaacaatctcactcctccagaatcgaacaaatcaaaaaacaacaatcgcttaaatcgttag |
100 |
Q |
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| T |
55091822 |
atttcaactgcttcaaagaaactcaaagcttttcaactcgaacaatctcactcctccagaatcgaacaaatcaaacaacaacaatcgcttaaatcgttag |
55091921 |
T |
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| Q |
101 |
ccaaatcactcactgtttggcttaatttccttctcgaatcacctgcttcttgcggttgcgatgtttcaatcgccggtggaagtcagatcgcagatgcttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55091922 |
ccaaatcactcactgtttggcttaatttccttctcgaatcacctgcttcttgcggttgcgatgtttcaatcgccggtggaagtcagatcgcagatgcttc |
55092021 |
T |
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| Q |
201 |
tccggtgtcgagtaaggggaaacgtgat |
228 |
Q |
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||||||| |||||||||||||||||||| |
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| T |
55092022 |
tccggtgacgagtaaggggaaacgtgat |
55092049 |
T |
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