View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19603_low_3 (Length: 448)
Name: NF19603_low_3
Description: NF19603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19603_low_3 |
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| [»] scaffold0449 (1 HSPs) |
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| [»] scaffold0696 (1 HSPs) |
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| [»] scaffold0001 (1 HSPs) |
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| [»] scaffold0566 (1 HSPs) |
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Alignment Details
Target: scaffold0449 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: scaffold0449
Description:
Target: scaffold0449; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 14 - 435
Target Start/End: Complemental strand, 3183 - 2762
Alignment:
| Q |
14 |
aatatagatcaagttatgatgtttgaggagtcaactatgaaatgggagacttttcagaatttgtgtttgagatttaactaactttcctttcacttttcct |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3183 |
aatatagatcaagttatgatgtttgaggagtcaactatgaaatgggagacttttcagaatttgtgtttgagatttaactaactttcctttcacttttcct |
3084 |
T |
|
| Q |
114 |
attacactataaatagattaatgaagtaccattagtaattcatttaaagttgtctatcatatcaggcaggcaggccctcatattctatagctacagggaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3083 |
attacactataaatagattaatgaagtaccattagtaattcatttaaagttgtctatcatatcaggcaggcaggccctcatattctatagctacggggaa |
2984 |
T |
|
| Q |
214 |
cgtgtaaccctcctattcaaccatgacctcataaaaaatcttctttgagagatccaaatccacgagtatctttgcataatgccgatataatctattcttc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2983 |
cgtgtaaccctcctattcaaccatgacctcataaaaaatcttctttgagagatccaaatccacgagtatctttgcataatgccgatataatctattcttc |
2884 |
T |
|
| Q |
314 |
gtaacattgtcaataagtaacggagagcaatctcgtacaaggtcctctccatccaatatatgcacaaaaacgcattgaagataaatccaaaaactcataa |
413 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2883 |
gtaacattgtcaataagtaacggagagcaatctcatacaaggtcctctccatccaatatatgcacaaaaacacattgaagataaatccaaaaactcataa |
2784 |
T |
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| Q |
414 |
atcaattcttgaaccaaccatt |
435 |
Q |
| |
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| T |
2783 |
atcaattcttgaaccaaccatt |
2762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0696 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0696
Description:
Target: scaffold0696; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 218 - 336
Target Start/End: Original strand, 4063 - 4181
Alignment:
| Q |
218 |
taaccctcctattcaaccatgacctcataaaaaatcttctttgagagatccaaatccacgagtatctttgcataatgccgatataatctattcttcgtaa |
317 |
Q |
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|||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||| ||| |||| |||||| || || ||||||||| | || | |
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| T |
4063 |
taaccctcctgttcgaccatgacctcataaaaaatattctttgagagatccaaatccaagagaatctgtgcatagtggtcgtacaatctattcgttgtta |
4162 |
T |
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| Q |
318 |
cattgtcaataagtaacgg |
336 |
Q |
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| T |
4163 |
cattgtcaatcagtaacgg |
4181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 218 - 336
Target Start/End: Original strand, 8686758 - 8686876
Alignment:
| Q |
218 |
taaccctcctattcaaccatgacctcataaaaaatcttctttgagagatccaaatccacgagtatctttgcataatgccgatataatctattcttcgtaa |
317 |
Q |
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|||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||| ||| |||| |||||| || || ||||||||| | || | |
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| T |
8686758 |
taaccctcctgttcgaccatgacctcataaaaaatattctttgagagatccaaatccaagagaatctgtgcatagtggtcgtacaatctattcgttgtta |
8686857 |
T |
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| Q |
318 |
cattgtcaataagtaacgg |
336 |
Q |
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|||||||||| |||||||| |
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| T |
8686858 |
cattgtcaatcagtaacgg |
8686876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 324
Target Start/End: Original strand, 22392799 - 22392904
Alignment:
| Q |
219 |
aaccctcctattcaaccatgacctcataaaaaatcttctttgagagatccaaatccacgagtatctttgcataatgccgatataatctattcttcgtaac |
318 |
Q |
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|||||||| |||| ||||| ||||||||||||| ||| |||| |||||||||||||| |||||| ||||||||| | ||| |||| |||| | || || |
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| T |
22392799 |
aaccctcccattcgaccatcgcctcataaaaaatattccttgaaagatccaaatccacaagtatccgtgcataatgtccatacaatcgattccttgtgac |
22392898 |
T |
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| Q |
319 |
attgtc |
324 |
Q |
| |
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|||||| |
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| T |
22392899 |
attgtc |
22392904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 372
Target Start/End: Complemental strand, 54750 - 54718
Alignment:
| Q |
340 |
gcaatctcgtacaaggtcctctccatccaatat |
372 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
54750 |
gcaatctcgtacaaggtcctctccatccaatat |
54718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0566 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0566
Description:
Target: scaffold0566; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 372
Target Start/End: Original strand, 4086 - 4118
Alignment:
| Q |
340 |
gcaatctcgtacaaggtcctctccatccaatat |
372 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
4086 |
gcaatctcatacaaggtcctctccatccaatat |
4118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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