View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19603_low_4 (Length: 395)
Name: NF19603_low_4
Description: NF19603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19603_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 90 - 391
Target Start/End: Original strand, 2014054 - 2014359
Alignment:
| Q |
90 |
tctgcaacgtcttttttataattatcagatgaagttcaacacaatcgtaaacggtcattagtttcacttta-----ttacataataatttcccttctcca |
184 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2014054 |
tctgcaatgtcttttttataattatcagatgaagttcaacacagtcgtaaacggtcattagtttcactttaatttattacataataatttcccttctcca |
2014153 |
T |
|
| Q |
185 |
atttttcgctttaaattattaggcaaataatatagagatttgctacttcttgttgcagaaaggttttttgcctatgaataatccttgatgttaactatat |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2014154 |
atttttcgctttaaattattaggcaaataatatagagattttctacttcctgttgcagaaaggtttt-tgcctatgaataatccttgatgttaactatat |
2014252 |
T |
|
| Q |
285 |
ttcttgttcatcaaggtggatatgcatgagattatttaaactttgtctatgaaagacatttttcacatagcttgttgtgttgaaactaggttgtacatga |
384 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2014253 |
ttcttgttcatcaaggtggatatggatgagattatttaaactttgtctatgaaagacatttttcacatagcttgttgtgttgaaactaggttgtacatga |
2014352 |
T |
|
| Q |
385 |
tgatgtc |
391 |
Q |
| |
|
||||||| |
|
|
| T |
2014353 |
tgatgtc |
2014359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University