View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19603_low_8 (Length: 360)
Name: NF19603_low_8
Description: NF19603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19603_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 55092092 - 55092442
Alignment:
| Q |
1 |
actccaaaacgacagaggaagacgacgatggcaacttcttcgtcgcgttttggtaaggagaatgtgtctgctgtggatatgcagaattcatcgttttcgc |
100 |
Q |
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| T |
55092092 |
actccgaaacgacagaggaagacgacgatgacaacttcttcgtcgcgttttggtaaggagaatgtgtctgctgtggatatgcagaattcatcgttttcgc |
55092191 |
T |
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| Q |
101 |
gtttgaaggattctttgaaggatgtatgtagcttcgatgattttaagctgcggatgagtgtttatttgagtctcggaacttgtgaagatattttccatgt |
200 |
Q |
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| T |
55092192 |
gtttgaaggattctttgaaggatgtatgtagcttcgatgattttaagcagcggatgagtgtttatttgagtctcggaacttgtgaagatattttccatgt |
55092291 |
T |
|
| Q |
201 |
catgaatcaagtcactaaggtttgttttctctcttccacatgctttgcttgaaatttgaattatcgtgtactc------tttcaaaatgaatgttgttca |
294 |
Q |
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| T |
55092292 |
catgaatcaagtcactaaggtttgttttctctcttccacatgctttgcttgaaatttgaattatcgtgtactctatctgtttcaaaatgaatgttgttca |
55092391 |
T |
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| Q |
295 |
ggtttctagagacatattaagaaatgcaatgatgaaaaaatagataatgat |
345 |
Q |
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| T |
55092392 |
ggtttctagagacatattaagaaatgcaatgatgaacaaatagataatgat |
55092442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 328
Target Start/End: Complemental strand, 30106444 - 30106410
Alignment:
| Q |
294 |
aggtttctagagacatattaagaaatgcaatgatg |
328 |
Q |
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| T |
30106444 |
aggtttctagacacatattaagaaatgcaatgatg |
30106410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 324
Target Start/End: Complemental strand, 8565981 - 8565931
Alignment:
| Q |
274 |
tttcaaaatgaatgttgttcaggtttctagagacatattaagaaatgcaat |
324 |
Q |
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| T |
8565981 |
tttcaaaatgaatgtcgttaaggtttttacacacatattaagaaatgcaat |
8565931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 343
Target Start/End: Original strand, 14593310 - 14593347
Alignment:
| Q |
306 |
acatattaagaaatgcaatgatgaaaaaatagataatg |
343 |
Q |
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| T |
14593310 |
acatattaagaaatgcaatgattaaaaaaaagataatg |
14593347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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