View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19603_low_9 (Length: 334)
Name: NF19603_low_9
Description: NF19603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19603_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 14166241 - 14166563
Alignment:
| Q |
1 |
aaacatcacgactttaagtcttgattaaactattaagcacaagctccatcaagagaagggaaaaactcattcctctttccccaagagagtgagaagaaac |
100 |
Q |
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| T |
14166241 |
aaacatcacaactttaagtcttgattaaactattaagcacaagctccatcaagagaagggaaaaactcattcctctttccccaagagagtgagaagaaac |
14166340 |
T |
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| Q |
101 |
ttcttgtaatcccctgaagtttccttggccacaacatgctcaagaagaacactgtttcttttgtagtaaacatctgagatgacttttaggtcatgctgag |
200 |
Q |
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| T |
14166341 |
ttcttgtaatcccctgaagtttccttggccacaacatgctcaagaagaacactgtttcttttgtagtaaacatctgagatgacttttaggtcatgctgag |
14166440 |
T |
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| Q |
201 |
ctctgctcacaatcacacgggtgagcgcatcctcatcggttccaaccttcttgattgcatctcgcaccacctacaatatgatcagaaaatgtaaagtt-a |
299 |
Q |
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| T |
14166441 |
ctctgctcacaatcacacgggtcagcgcatcctcatcagttccaaccttcttgattgcatctcgcaccacctacgatttgatcagaaaatgtaaagttca |
14166540 |
T |
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| Q |
300 |
aatcattgtagtaacaatatttt |
322 |
Q |
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| T |
14166541 |
aatcattgtagtaacaatatttt |
14166563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 76 - 168
Target Start/End: Complemental strand, 5181766 - 5181674
Alignment:
| Q |
76 |
tttccccaagagagtgagaagaaacttcttgtaatcccctgaagtttccttggccacaacatgctcaagaagaacactgtttcttttgtagta |
168 |
Q |
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| T |
5181766 |
tttccccaaaagagtgaggatgaacttcttgtagtcccctgaggtttccttggaaacttcatcttcaagatgaacactgtttctcttgtagta |
5181674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 246
Target Start/End: Complemental strand, 5189592 - 5189555
Alignment:
| Q |
209 |
acaatcacacgggtgagcgcatcctcatcggttccaac |
246 |
Q |
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| T |
5189592 |
acaatcacacgggtgagtgcatcctcatcggttccaac |
5189555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 165
Target Start/End: Complemental strand, 5246431 - 5246335
Alignment:
| Q |
69 |
attcctctttccccaagagagtgagaagaaacttcttgtaatcccctgaagtttccttggccacaacatgctcaagaagaacactgtttcttttgta |
165 |
Q |
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| T |
5246431 |
attcttctttccccatcagagtaaggagaaatttcttgtaatctcctgaagtttttttggccactgcatgctcaagttggacactatttctcttgta |
5246335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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