View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19604_high_13 (Length: 260)

Name: NF19604_high_13
Description: NF19604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19604_high_13
NF19604_high_13
[»] scaffold0366 (3 HSPs)
scaffold0366 (98-245)||(9845-9995)
scaffold0366 (167-245)||(12516-12594)
scaffold0366 (98-157)||(13602-13661)
[»] scaffold0623 (1 HSPs)
scaffold0623 (167-245)||(1563-1641)
[»] scaffold0459 (2 HSPs)
scaffold0459 (167-245)||(11209-11287)
scaffold0459 (98-157)||(12295-12354)


Alignment Details
Target: scaffold0366 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 98 - 245
Target Start/End: Complemental strand, 9995 - 9845
Alignment:
Q  98 caaaccaaacacactcttaaagtggacaatcatcgtagaggtccacaaaagatacacttannnnnnnnn---gtataatttcaaaagtttttgaagctgt 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||    
T  9995 caaaccaaacacactcttaaagtggacaatcatcgtagaggtccacaaaagatacacttattttttttttttgtataatttcaaaagtttttgaagctgt 9896  T
Q  195 taaaaatttacagtaatattagtctgattatgtcctacttgttgtgtgtat 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9895 taaaaatttacagtaatattagtctgattatgtcctacttgttgtgtgtat 9845  T

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Target: scaffold0366; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 12594 - 12516
Alignment:
Q  167 gtataatttcaaaagtttttgaagctgttaaaaatttacagtaatattagtctgattatgtcctacttgttgtgtgtat 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12594 gtataatttcaaaagtttttgaagctgttaaaaatttacagtaatattagtctgattatgtcctacttgttgtgtgtat 12516  T

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Target: scaffold0366; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 98 - 157
Target Start/End: Complemental strand, 13661 - 13602
Alignment:
Q  98 caaaccaaacacactcttaaagtggacaatcatcgtagaggtccacaaaagatacactta 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13661 caaaccaaacacactcttaaagtggacaatcatcgtagaggtccacaaaagatacactta 13602  T

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Target: scaffold0623 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 1641 - 1563
Alignment:
Q  167 gtataatttcaaaagtttttgaagctgttaaaaatttacagtaatattagtctgattatgtcctacttgttgtgtgtat 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1641 gtataatttcaaaagtttttgaagctgttaaaaatttacagtaatattagtctgattatgtcctacttgttgtgtgtat 1563  T

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Target: scaffold0459 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 11287 - 11209
Alignment:
Q  167 gtataatttcaaaagtttttgaagctgttaaaaatttacagtaatattagtctgattatgtcctacttgttgtgtgtat 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11287 gtataatttcaaaagtttttgaagctgttaaaaatttacagtaatattagtctgattatgtcctacttgttgtgtgtat 11209  T

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Target: scaffold0459; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 98 - 157
Target Start/End: Complemental strand, 12354 - 12295
Alignment:
Q  98 caaaccaaacacactcttaaagtggacaatcatcgtagaggtccacaaaagatacactta 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12354 caaaccaaacacactcttaaagtggacaatcatcgtagaggtccacaaaagatacactta 12295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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