View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19604_high_5 (Length: 456)
Name: NF19604_high_5
Description: NF19604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19604_high_5 |
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| [»] scaffold0354 (1 HSPs) |
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Alignment Details
Target: scaffold0354 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: scaffold0354
Description:
Target: scaffold0354; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 19 - 456
Target Start/End: Original strand, 10817 - 11254
Alignment:
| Q |
19 |
agtaactggtaccggtgaagtattccccaaattaaaaaccctcaactgcgccggacccctcttcttaccaccactaccagtactcttctcagcagtatcc |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10817 |
agtaactggtaccggtgaagtattccccaaattaaaaaccctcaactgtgccgtacccctcttcttaccaccactaccagtactcttctcagcagtatcc |
10916 |
T |
|
| Q |
119 |
aatgctcctaaacaccccctcacaatatcgtcaatataagtaaaatccctagcaacagttccatggttcggcccttcgaaaatcgttatcgatttccctc |
218 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10917 |
aatgctcctaaacaccccctcacaatatcatcaatataagtaaaatccctagcaacagttccatggttcggcccttcgaaaatcgttatcgatttccctc |
11016 |
T |
|
| Q |
219 |
tcaaaatatccttagtgnnnnnnnngtatgccatatcaggccttccccaaggtccataaacagtgaagaatctcaatccggttaacgaaagtacatagat |
318 |
Q |
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||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
11017 |
tcaaaatatccttagtgaaaaaaaagtatgccatatctggccttccccaaggtccataaacagtgaagaatctcaatccggttaacgaaagtccatagat |
11116 |
T |
|
| Q |
319 |
atgattataagtatgcgcgatttattcgcccgcttttttcgtagcagcatacaaactagcaggttgataagtcctatccttttcggaaaagggtactttt |
418 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
11117 |
atgattataagtatgcgcgatttcttcgcccgcttttttcgtagcagcatacaaactagcaggttgatcagtcctatctttttcggaaaagggtactttt |
11216 |
T |
|
| Q |
419 |
gaatttaatccataaactgaacttgaagaagcccatac |
456 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
11217 |
gaatttaatccataaactgaacttgaagaagcccatac |
11254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 160; Significance: 4e-85; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 38 - 441
Target Start/End: Original strand, 8315568 - 8315971
Alignment:
| Q |
38 |
gtattccccaaattaaaaaccctcaactgcgccggacccctcttcttaccaccactaccagtactcttctcagcagtatccaatgctcctaaacaccccc |
137 |
Q |
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|||||||||||||| |||||||||||||| ||||| ||||||||||| |||||||| |||||||||||||||||||||||||| || ||||||||||||| |
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| T |
8315568 |
gtattccccaaattgaaaaccctcaactgtgccggccccctcttcttcccaccacttccagtactcttctcagcagtatccaaagcacctaaacaccccc |
8315667 |
T |
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| Q |
138 |
tcacaatatcgtcaatataagtaaaatccctagcaacagttccatggttcggcccttcgaaaatcgttatcgatttccctctcaaaatatccttagtgnn |
237 |
Q |
| |
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|||||||||| |||||||||||||||||||| ||||| || ||||| |||| | | || ||||| | || | ||||| |||||||||| ||||| |
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| T |
8315668 |
tcacaatatcatcaatataagtaaaatccctcgcaacggtgccatgattcgccgcctcaaaaataggaatagtcttccccttcaaaatatctctagtgaa |
8315767 |
T |
|
| Q |
238 |
nnnnnngtatgccatatcaggccttccccaaggtccataaacagtgaagaatctcaatccggttaacgaaagtacatagatatgattataagtatgcgcg |
337 |
Q |
| |
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||| |||||||||||||| |||||||| |||||||||||||| || ||||| || ||||| ||||| |||||||||||||||||||||| ||| |
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| T |
8315768 |
aaagaagtaagccatatcaggcctaccccaaggaccataaacagtgaaaaacctcaaaccagttaaagaaagaccatagatatgattataagtatgtgcg |
8315867 |
T |
|
| Q |
338 |
atttattcgcccgcttttttcgtagcagcatacaaactagcaggttgataagtcctatccttttcggaaaagggtacttttgaatttaatccataaactg |
437 |
Q |
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|||| ||| || ||||| || ||||| |||||||||||||||||||||| ||| ||||| |||| ||||| || || || | ||| ||||||||||| | |
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| T |
8315868 |
atttcttcaccggctttcttagtagcggcatacaaactagcaggttgatcagttctatctctttcagaaaaaggaaccttagtattcaatccataaacag |
8315967 |
T |
|
| Q |
438 |
aact |
441 |
Q |
| |
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|||| |
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| T |
8315968 |
aact |
8315971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 32 - 333
Target Start/End: Original strand, 42372966 - 42373267
Alignment:
| Q |
32 |
ggtgaagtattccccaaattaaaaaccctcaactgcgccggacccctcttcttaccaccactaccagtactcttctcagcagtatccaatgctcctaaac |
131 |
Q |
| |
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||||||||||||||||||||||||||||| || || |||| |||| ||||||| |||||||| ||||||||||| | || ||||||| || ||||||| |
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| T |
42372966 |
ggtgaagtattccccaaattaaaaaccctaaattgagccgaacccttcttcttcccaccactcccagtactcttttttgccgtatccagagcccctaaac |
42373065 |
T |
|
| Q |
132 |
accccctcacaatatcgtcaatataagtaaaatccctagcaacagttccatggttcggcccttcgaaaatcgttatcgatttccctctcaaaatatcctt |
231 |
Q |
| |
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| ||| | |||| ||| ||||| || |||||||||||||| || | |||| | || ||| || | |||||| |||||| ||||||||||||| |
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| T |
42373066 |
aacccttaacaacatcatcaatgtatgtaaaatccctagccactgatccaccatctggtgattcaaacactgttatctgtttccccttcaaaatatcctt |
42373165 |
T |
|
| Q |
232 |
agtgnnnnnnnngtatgccatatcaggccttccccaaggtccataaacagtgaagaatctcaatccggttaacgaaagtacatagatatgattataagta |
331 |
Q |
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||| || ||||||||||||||||||||||| |||||||| ||||| |||| ||| |||| | ||||| | |||||||||||||||||| |
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| T |
42373166 |
tgtgaagaagaaatacgccatatcaggccttccccaaggcccataaaccgtgaaaaatcgcaacgcggtgattgaaagcccgtagatatgattataagta |
42373265 |
T |
|
| Q |
332 |
tg |
333 |
Q |
| |
|
|| |
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| T |
42373266 |
tg |
42373267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 453
Target Start/End: Complemental strand, 54114703 - 54114510
Alignment:
| Q |
260 |
cttccccaaggtccataaacagtgaagaatctcaatccggttaacgaaagtacatagatatgattataagtatgcgcgatttattcgcccgcttttttcg |
359 |
Q |
| |
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|||||||| |||||||||||||| || |||| || ||||| | ||||| | || || ||||||||||| || | ||||| ||| || ||||| |||| |
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| T |
54114703 |
cttccccatggtccataaacagtaaaaaatcgtaaaccggtgattgaaagaccgtaaatgtgattataagtgtgagtgatttcttcacctgctttcttcg |
54114604 |
T |
|
| Q |
360 |
tagcagcatacaaactagcaggttgataagtcctatccttttcggaaaagggtacttttgaatttaatccataaactgaacttgaagaagccca |
453 |
Q |
| |
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| || ||||| ||||| || ||||||| |||| |||| ||| ||||| || ||||| ||||| |||||||| ||||| ||||||||||| |
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| T |
54114603 |
tcgctgcatataaactcgccggttgatcggtccgatccgattcagaaaacggaactttctcgtttaaaccataaaccgaactcgaagaagccca |
54114510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 248 - 450
Target Start/End: Original strand, 3519886 - 3520088
Alignment:
| Q |
248 |
gccatatcaggccttccccaaggtccataaacagtgaagaatctcaatccggttaacgaaagtacatagatatgattataagtatgcgcgatttattcgc |
347 |
Q |
| |
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||||||||||| | |||||||| ||||||||||||||||| | || || |||| ||||| |||| ||||||||||||||||| || | || ||| | |
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|
| T |
3519886 |
gccatatcaggacgaccccaaggaccataaacagtgaagaaacgtaaaccagttacggaaagaccataaatatgattataagtatgtgcaaattcttcac |
3519985 |
T |
|
| Q |
348 |
ccgcttttttcgtagcagcatacaaactagcaggttgataagtcctatccttttcggaaaagggtacttttgaatttaatccataaactgaacttgaaga |
447 |
Q |
| |
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| ||||| ||||| || ||||| | |||||||||||||| || | ||||||||| ||||| || || |||||||| || ||||| ||||| ||||| |
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| T |
3519986 |
cagctttcttcgtcgctgcatagagactagcaggttgatccgttcgatccttttccgaaaaaggagtcttcgaatttaacccgtaaaccgaactcgaaga |
3520085 |
T |
|
| Q |
448 |
agc |
450 |
Q |
| |
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||| |
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| T |
3520086 |
agc |
3520088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 29 - 170
Target Start/End: Original strand, 3519667 - 3519808
Alignment:
| Q |
29 |
accggtgaagtattccccaaattaaaaaccctcaactgcgccggacccctcttcttaccaccactaccagtactcttctcagcagtatccaatgctccta |
128 |
Q |
| |
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||||| |||||||| ||||| ||||||| ||| | ||||| ||| ||||||| ||||||||||||||||| |||| ||| |||||||| || |||| |
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| T |
3519667 |
accggcgaagtattacccaagttaaaaatcctatattgcgcatttcccttcttcttcccaccactaccagtacttttcttagctgtatccaaagccccta |
3519766 |
T |
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| Q |
129 |
aacaccccctcacaatatcgtcaatataagtaaaatccctag |
170 |
Q |
| |
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||||||| | |||||||| ||||||| |||||||| |||| |
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| T |
3519767 |
aacaccctttgacaatatcaccaatatacgtaaaatctctag |
3519808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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