View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19604_high_8 (Length: 360)
Name: NF19604_high_8
Description: NF19604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19604_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 22 - 342
Target Start/End: Original strand, 2040672 - 2040992
Alignment:
| Q |
22 |
agcaaataatgatacatagcattgttatcttcattgcctgaccctaaaatttccttcttaaaaagtgagatatttggaagttgaaccaattcctctcctt |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2040672 |
agcaaataatgatacatagcattgttatcttcattgcctgaccctaaaatttcgttcttaaaaagtgagatatttggaagttgaaccaattcctctcctt |
2040771 |
T |
|
| Q |
122 |
ttcattgctgtgttatttttgacctccaagctattaagaaaatccttctttgacttcttcattatgttgctgctcttcactgacaagttgtatccagatc |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2040772 |
ttcattgctgtgttatttttgacctccaagctattaagaaaatccttctttgacttcttcattatgttgctgctcttcactgacaagttgtatccagatc |
2040871 |
T |
|
| Q |
222 |
cattatctccacaaaatcttctttcactgggtggaagtttggtgcatgttttgattttcctgctttgttttcttgcatcttcttccttgtagcgttgcgc |
321 |
Q |
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|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2040872 |
cattatctccacaaaatcttctttcgctgggtggaagtttggtgcatgttttgattttcctgctttgttttcttgcatcttcttccttgtagcgttgcgc |
2040971 |
T |
|
| Q |
322 |
gagtcgatcaactgcttcatt |
342 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
2040972 |
gagtcgatcaactgcttcatt |
2040992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 1352993 - 1352652
Alignment:
| Q |
1 |
aatagcatattatctaaaagcagcaaataatgatacatagcattgttatcttcattgcctgaccctaaaatttccttcttaaaaagtgagatatttggaa |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1352993 |
aatagcatattatctaaaagcagcaaataatgatacatagcattgttatcctcattgcctgcccctaaaatttccttcttaaaaagtgagatatttggaa |
1352894 |
T |
|
| Q |
101 |
gttgaaccaattcctctccttttcattgctgtgttatttttgacctccaagctattaagaaaatccttctttgacttcttcattatgttgctgctcttca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1352893 |
gttgaaccaattcctctccttttcattgctgtgatatttttgacctcaaaactattaagaaaatccttctttgacttcttcattatgttgctgctcttca |
1352794 |
T |
|
| Q |
201 |
ctgacaagttgtatccagatccattatctccacaaaatcttctttcactgggtggaagtttggtgcatgttttgattttcctgctttgttttcttgcatc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1352793 |
ctgacaagttgtatccagatccattatctccacaaaatcttctttcactgggtggaagtttggtgcatgttttgatttgcctgctttgttttcttgcatc |
1352694 |
T |
|
| Q |
301 |
ttcttccttgtagcgttgcgcgagtcgatcaactgcttcatt |
342 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||| |
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|
| T |
1352693 |
ttcttccttgtagcgtttcgtgagtcgatcaactgcttcatt |
1352652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 213 - 342
Target Start/End: Complemental strand, 1364732 - 1364603
Alignment:
| Q |
213 |
atccagatccattatctccacaaaatcttctttcactgggtggaagtttggtgcatgttttgattttcctgctttgttttcttgcatcttcttccttgta |
312 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1364732 |
atccaggtccatcatctccacaaaatcttcttttacttggtggaagtttggtgcatgttttgatttgcctgctttgttttcttgcatcttcttccttgta |
1364633 |
T |
|
| Q |
313 |
gcgttgcgcgagtcgatcaactgcttcatt |
342 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |
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| T |
1364632 |
gcgttgcgtgagtcgatcaactgcttcatt |
1364603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 233 - 342
Target Start/End: Complemental strand, 1357895 - 1357786
Alignment:
| Q |
233 |
caaaatcttctttcactgggtggaagtttggtgcatgttttgattttcctgctttgttttcttgcatcttcttccttgtagcgttgcgcgagtcgatcaa |
332 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1357895 |
caaaatcttcttttacttggtggaagtttggtgcatgttttgatttgcctgctttgttttcttgcatcttcttccttgtagcgttgcgcgagtcgatcaa |
1357796 |
T |
|
| Q |
333 |
ctgcttcatt |
342 |
Q |
| |
|
|||||||||| |
|
|
| T |
1357795 |
ctgcttcatt |
1357786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 113
Target Start/End: Complemental strand, 1358029 - 1357941
Alignment:
| Q |
24 |
caaataatgatacatagcattgttatcttcattgcctgaccctaaaatttccttcttaaaaagtgagatatttggaagttgaaccaattc |
113 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |||||||| | | |||||||||||||||| |||||||||||| |||||| |
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| T |
1358029 |
caaataatgatacatagcattgttatcctcattgcctgcccctaaaaaat-atccttaaaaagtgagatacttggaagttgaaacaattc |
1357941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 177
Target Start/End: Original strand, 10043776 - 10043832
Alignment:
| Q |
122 |
ttcattgctgtgttatttttgacctccaag-ctattaagaaaatccttctttgactt |
177 |
Q |
| |
|
|||||||||||| ||||||| ||||| || |||||||||||||| ||||||||||| |
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| T |
10043776 |
ttcattgctgtgatattttttacctcaaaaactattaagaaaatctttctttgactt |
10043832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 122 - 342
Target Start/End: Complemental strand, 36717912 - 36717698
Alignment:
| Q |
122 |
ttcattgctgtgttatttttgacctccaagctattaagaaaatccttctttgacttcttcattatgttgctgctcttcactgacaagttgtatccagatc |
221 |
Q |
| |
|
|||||||||||| ||||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||| | ||| |||||| || |
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| T |
36717912 |
ttcattgctgtgatattttttacctcaaaactattaagaaaatctttctttgacttcttcattatgttgctgctcttcac-----atttg-atccaggtc |
36717819 |
T |
|
| Q |
222 |
cattatctccacaaaatcttctttcactgggtggaagtttggtgcatgttttgattttcctgctttgttttcttgcatcttcttccttgtagcgttgcgc |
321 |
Q |
| |
|
| || |||||| |||||||||||| | | ||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36717818 |
cgttgtctccagaaaatcttcttttattaggtggaactatggtgcatgtttttattttcctgctttgttttcttgcatcttcttccttgtagcgttgcgc |
36717719 |
T |
|
| Q |
322 |
gagtcgatcaactgcttcatt |
342 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
36717718 |
gagtcgatcaactgcttcatt |
36717698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 114
Target Start/End: Complemental strand, 36718014 - 36717977
Alignment:
| Q |
77 |
tcttaaaaagtgagatatttggaagttgaaccaattcc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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|
| T |
36718014 |
tcttaaaaagtgagatatttggaagttgaaccaattcc |
36717977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 154 - 343
Target Start/End: Original strand, 24619733 - 24619925
Alignment:
| Q |
154 |
attaagaaaatccttctttgacttcttcattatgttgctgctcttcac---tgacaagttgtatccagatccattatctccacaaaatcttctttcactg |
250 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||||||| ||| |||||||||| || ||||||| ||||||| |||||||||| ||| |
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|
| T |
24619733 |
attaagaaaatatttctttgatttcttcattatgttgctgctcttcacatttgagaagttgtatctaggtccattacctccacacaatcttcttttacta |
24619832 |
T |
|
| Q |
251 |
ggtggaagtttggtgcatgttttgattttcctgctttgttttcttgcatcttcttccttgtagcgttgcgcgagtcgatcaactgcttcattt |
343 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||| | |||||||||||||||||||| |
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|
| T |
24619833 |
ggtggaattttggtgcatgtttttattttcctgctttgttttcttgcatcttcttccttttagcattgcgtgggtcgatcaactgcttcattt |
24619925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 18178758 - 18178806
Alignment:
| Q |
22 |
agcaaataatgatacatagcattgttatcttcattgcctgaccctaaaa |
70 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||| ||| |||||||| |
|
|
| T |
18178758 |
agcaaataatgatacatagcattgctatcctcattgtctgcccctaaaa |
18178806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 155 - 239
Target Start/End: Original strand, 18179206 - 18179290
Alignment:
| Q |
155 |
ttaagaaaatccttctttgacttcttcattatgttgctgctcttcac---tgacaagttgtatccagatccattatctccacaaaatc |
239 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||| |||||| ||||| ||||||||||| |||||||||| || |||||| |
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|
| T |
18179206 |
ttaagaaattctatctttgacttcttcattatgttgct---cttcacatttgacacgttgtatccaggtccattatctacaaaaaatc |
18179290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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