View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19604_low_1 (Length: 658)

Name: NF19604_low_1
Description: NF19604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19604_low_1
NF19604_low_1
[»] chr1 (3 HSPs)
chr1 (27-643)||(15593742-15594356)
chr1 (283-630)||(4679414-4679758)
chr1 (306-346)||(29464835-29464875)
[»] chr7 (8 HSPs)
chr7 (275-640)||(8586559-8586921)
chr7 (283-636)||(8615676-8616026)
chr7 (421-543)||(3146363-3146485)
chr7 (421-538)||(8645976-8646093)
chr7 (427-538)||(8640653-8640764)
chr7 (476-566)||(13334292-13334382)
chr7 (586-640)||(8666680-8666734)
chr7 (282-347)||(8658323-8658388)
[»] chr2 (3 HSPs)
chr2 (275-621)||(16662867-16663210)
chr2 (586-635)||(12246267-12246316)
chr2 (586-630)||(16658383-16658427)
[»] chr4 (1 HSPs)
chr4 (362-640)||(30774289-30774567)
[»] chr8 (3 HSPs)
chr8 (427-536)||(43743918-43744027)
chr8 (423-533)||(43445783-43445894)
chr8 (71-211)||(1767117-1767256)
[»] chr5 (1 HSPs)
chr5 (448-536)||(28219041-28219129)
[»] scaffold0248 (1 HSPs)
scaffold0248 (173-245)||(17757-17829)


Alignment Details
Target: chr1 (Bit Score: 460; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 27 - 643
Target Start/End: Original strand, 15593742 - 15594356
Alignment:
Q  27 tttgggagacaaggtgcaaagaaagctcaaataaaccnnnnnnngattattaactaaagcacaagagcctgatagggatcttaatttggaagcagtgttt 126  Q
    ||||| ||||||||| || ||||||||||||||||||       ||||||||||||||||||||| |||||||||||||||| |||||||||||  ||||    
T  15593742 tttggaagacaaggtccatagaaagctcaaataaaccaaaaac-gattattaactaaagcacaagtgcctgatagggatcttgatttggaagcaaggttt 15593840  T
Q  127 -caaatatgctctactaaaactagaaaacaagacaaaacacacaaacaatttaagtaacatgttccatgcagatttcatcataaacatcaatacttttag 225  Q
     ||||||||||  |||||||||||||||||||||| || |||||||||||||||| |||||||| | |||| |||||||||||||||||||||||||| |    
T  15593841 tcaaatatgct--actaaaactagaaaacaagacagaaaacacaaacaatttaagcaacatgtttcgtgcaaatttcatcataaacatcaatactttttg 15593938  T
Q  226 ataatgataatcaacctaaatgtttgttatgctaaacaaagaagaatataactagtcagtcttgactacaaggttttcgaacatgctctcgagctccttc 325  Q
    |||||||||||||||||||||||||||| |||| ||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  15593939 ataatgataatcaacctaaatgtttgttgtgctgaacaaagaagagtaaaactagccagtcttgactacaaggttttcgaacatgctctcgagctccttc 15594038  T
Q  326 agattaccctcaagaacatctacttcattatgctggtgattcttcttatcaagcaaatttgcagccactgtaattgcaccatttatctttgtaacttctt 425  Q
    | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  15594039 aaattaccctcaagaacatctacttcattatgctggttattcttcttatcaagcaaatttgtagccactgtaattgcaccattgatctttgtaacttctt 15594138  T
Q  426 tagaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaa 525  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15594139 tagaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaa 15594238  T
Q  526 tttctcatcttcagcacgatattcctcggcttcttgaatcannnnnnnaatttcatatgctgacaacctttctttgtcattggttattgtgatctcgttt 625  Q
    |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15594239 tttctcatcttcagcacgatattcctcggcttcttgaatcatttttttaatttcatatgctgacaacctttctttgtcattggttattgtgatctcgttt 15594338  T
Q  626 gtattgccagtggatgtt 643  Q
    ||||||||||||||||||    
T  15594339 gtattgccagtggatgtt 15594356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 283 - 630
Target Start/End: Complemental strand, 4679758 - 4679414
Alignment:
Q  283 agtcttgactacaaggttttcgaacatgctctcgagctccttcagattaccctcaagaacatctacttcattatgctggtgattcttcttatcaagcaaa 382  Q
    |||||||||| |||| ||||| ||||||||||| | ||||||||||| | ||||||||||||||| ||| ||   ||| |  || ||||||||||||||     
T  4679758 agtcttgacttcaagcttttccaacatgctctccaactccttcagatgatcctcaagaacatctatttcttt---ctgttcgttattcttatcaagcaag 4679662  T
Q  383 tttgcagccactgtaattgcaccatttatctttgtaacttctttagaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaa 482  Q
    || |  ||||||||||||||| | || ||||||  |  ||| | | ||||||| ||||| || |||||||| ||||| | ||||||  | |  |||||||    
T  4679661 ttggtggccactgtaattgcatcgttgatcttttcactttcatcacaagagagctttaaattaacatccttcttctttaaagcattcttgatattgtaaa 4679562  T
Q  483 cacagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttcagcacgatattcctcggcttcttgaatcannnnnnnaatttcata 582  Q
    ||||    || |||||| |||||||||  ||||||||||  ||||||| ||||||  | ||||||| ||| ||||||| |||||       || || | |    
T  4679561 cacaaaattccaatgcactcattaccttagccttccttaaaaatttcttatcttcctcgcgatatttctcagcttcttcaatcagttttttaacttgaaa 4679462  T
Q  583 tgctgacaacctttctttgtcattggttattgtgatctcgtttgtatt 630  Q
    || || |||||||||||| ||||||||||| ||||||| ||| |||||    
T  4679461 tgttgtcaacctttctttttcattggttatggtgatcttgttcgtatt 4679414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 306 - 346
Target Start/End: Original strand, 29464835 - 29464875
Alignment:
Q  306 acatgctctcgagctccttcagattaccctcaagaacatct 346  Q
    |||||||||| ||||||| ||||| ||||||||||||||||    
T  29464835 acatgctctccagctcctccagatgaccctcaagaacatct 29464875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 123; Significance: 7e-63; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 275 - 640
Target Start/End: Complemental strand, 8586921 - 8586559
Alignment:
Q  275 aactagtcagtcttgactacaaggttttcgaacatgctctcgagctccttcagattaccctcaagaacatctacttcattatgctggtgattcttcttat 374  Q
    |||||| || ||||||| | ||||| ||| ||||||||||| ||||||||||||| | || ||||||||||||  ||||| | ||||| ||||||   ||    
T  8586921 aactagccactcttgaccaaaaggtcttccaacatgctctcaagctccttcagatgatccacaagaacatctatgtcattctcctggttattctt---at 8586825  T
Q  375 caagcaaatttgcagccactgtaattgcaccatttatctttgtaacttctttagaagagagttttaatttgacatccttattcttcagagcatttctcaa 474  Q
    |||||||||||| ||||| ||||||||||  ||| |||||| |||||| || |||||||   |||| ||| | |||||||||||| |||||||| || ||    
T  8586824 caagcaaatttgtagccattgtaattgcatgattgatctttttaactttttgagaagagcactttagtttaatatccttattctttagagcattccttaa 8586725  T
Q  475 cttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttcagcacgatattcctcggcttcttgaatcannnnnnna 574  Q
    |||||||||||| |||||||||| |||||||||||  ||||||||||||||||||| ||| |||||  | ||  |||| |||||||||||||       |    
T  8586724 cttgtaaacacaatcatctaatgaattcattaccttagccttccttaggaatttctgatcctcagcgaggtacacctctgcttcttgaatcagtctttta 8586625  T
Q  575 atttcatatgctgacaacctttctttgtcattggttattgtgatctcgtttgtattgccagtggat 640  Q
    |||||||  || || ||||||||||||||||||||||| || || |||||||||||||||| ||||    
T  8586624 atttcatcagccgataacctttctttgtcattggttatcgttatttcgtttgtattgccagaggat 8586559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 283 - 636
Target Start/End: Original strand, 8615676 - 8616026
Alignment:
Q  283 agtcttgactacaaggttttcgaacatgctctcgagctccttcagattaccctcaagaacatctacttcattatgctggtgattcttcttatcaagcaaa 382  Q
    |||||| | |||||||| ||| ||||| || | |||||||||||||| | | || ||||| ||||||||| | ||||||| |||| |   ||||||||||    
T  8615676 agtcttaaatacaaggtcttccaacatacttttgagctccttcagatgatcttcgagaacttctacttcactctgctggttattcct---atcaagcaaa 8615772  T
Q  383 tttgcagccactgtaattgcaccatttatctttgtaacttctttagaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaa 482  Q
    |||| |||||| |||||||||   || || |||  ||||| || ||| || || |||||    |||||||||||||| |||||||| |||||||||||||    
T  8615773 tttgtagccacagtaattgcattgttgatattttcaactttttgagatgatagctttaaagcaacatccttattctttagagcattcctcaacttgtaaa 8615872  T
Q  483 cacagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttcagcacgatattcctcggcttcttgaatcannnnnnnaatttcata 582  Q
      |||||||||||| ||||||||||||  ||||||||||||||||| ||||||||||| || || ||||| |||||||||||||       ||||||||     
T  8615873 tgcagtcatctaattcattcattaccttggccttccttaggaatttttcatcttcagcgcggtactcctctgcttcttgaatcagttttttaatttcatc 8615972  T
Q  583 tgctgacaacctttctttgtcattggttattgtgatctcgtttgtattgccagt 636  Q
     || || ||||||||||||||||||||||| || || || ||||||||||||||    
T  8615973 agccgataacctttctttgtcattggttatcgttatttcatttgtattgccagt 8616026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 421 - 543
Target Start/End: Original strand, 3146363 - 3146485
Alignment:
Q  421 ttctttagaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttcctt 520  Q
    ||||| ||| ||||| ||||  || |||||||| ||||| | ||||||| ||| |||||||||||| | |||||||||||||||||| |  |||||||||    
T  3146363 ttcttgagaggagagatttatattcacatccttcttctttaaagcatttttcatcttgtaaacacaataatctaatgcattcattacattggccttcctt 3146462  T
Q  521 aggaatttctcatcttcagcacg 543  Q
    || ||||| ||||| ||| ||||    
T  3146463 agaaatttttcatcctcaacacg 3146485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 421 - 538
Target Start/End: Original strand, 8645976 - 8646093
Alignment:
Q  421 ttctttagaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttcctt 520  Q
    ||||||||| ||||| |||||||| ||||||||  |||| ||||| ||  ||| ||| ||||  || |  |||||| |||||||||| |  |||||||||    
T  8645976 ttctttagatgagagatttaatttaacatccttcctctttagagctttcttcagcttataaatgcaatggtctaatccattcattacattggccttcctt 8646075  T
Q  521 aggaatttctcatcttca 538  Q
    ||||||||||||||||||    
T  8646076 aggaatttctcatcttca 8646093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 427 - 538
Target Start/End: Complemental strand, 8640764 - 8640653
Alignment:
Q  427 agaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaat 526  Q
    ||||||||| |||| ||| | |||||||||||| ||||||||  ||| ||||||||  || |  |||||| |||||||||  |  |||||||||||||||    
T  8640764 agaagagagctttagtttaatatccttattctttagagcattcttcatcttgtaaatgcaatagtctaatccattcattaaattggccttccttaggaat 8640665  T
Q  527 ttctcatcttca 538  Q
    |||||| |||||    
T  8640664 ttctcagcttca 8640653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 476 - 566
Target Start/End: Complemental strand, 13334382 - 13334292
Alignment:
Q  476 ttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttcagcacgatattcctcggcttcttgaatca 566  Q
    |||||||||||   ||||||||||||||||||||  |||||||||| |||||||| ||||||  || | |||||||  ||||||| |||||    
T  13334382 ttgtaaacacaagaatctaatgcattcattaccttggccttccttaagaatttcttatcttcgacatggtattccttagcttctttaatca 13334292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 586 - 640
Target Start/End: Original strand, 8666680 - 8666734
Alignment:
Q  586 tgacaacctttctttgtcattggttattgtgatctcgtttgtattgccagtggat 640  Q
    ||||||||||||||||||||||||||| ||||||  |||  ||||||| ||||||    
T  8666680 tgacaacctttctttgtcattggttatggtgatcatgttcatattgcctgtggat 8666734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 347
Target Start/End: Original strand, 8658323 - 8658388
Alignment:
Q  282 cagtcttgactacaaggttttcgaacatgctctcgagctccttcagattaccctcaagaacatcta 347  Q
    |||| ||||||||||| ||||| |||||| | || ||||||||||||| | |||||| ||||||||    
T  8658323 cagtattgactacaagcttttccaacatgatttccagctccttcagatgatcctcaacaacatcta 8658388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 108; Significance: 7e-54; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 275 - 621
Target Start/End: Complemental strand, 16663210 - 16662867
Alignment:
Q  275 aactagtcagtcttgactacaaggttttcgaacatgctctcgagctccttcagattaccctcaagaacatctacttcattatgctggtgattcttcttat 374  Q
    |||||| ||||||||| ||||||||  || ||||| ||||| ||||||||||||| | ||||||||||||||||||||||   |||||   |||||| ||    
T  16663210 aactagacagtcttgattacaaggtgatccaacatactctcaagctccttcagatgatcctcaagaacatctacttcattcccctggt---tcttctcat 16663114  T
Q  375 caagcaaatttgcagccactgtaattgcaccatttatctttgtaacttctttagaagagagttttaatttgacatccttattcttcagagcatttctcaa 474  Q
     |||||||| |  |||||| |||||||||  ||| |||||| ||  || ||   |||| || ||||||||||||| ||||||||| |||||||| |||||    
T  16663113 gaagcaaatctttagccaccgtaattgcatgattgatctttttatttttttggaaagaaagctttaatttgacattcttattctttagagcattcctcaa 16663014  T
Q  475 cttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttcagcacgatattcctcggcttcttgaatcannnnnnna 574  Q
     |||||||  |||||||||||||||||||||||||  |||||||||||||||||||||||||||||| | || ||||  |||||||||||||       |    
T  16663013 tttgtaaatgcagtcatctaatgcattcattaccttggccttccttaggaatttctcatcttcagcatggtactccttagcttcttgaatcaatttttca 16662914  T
Q  575 atttcatatgctgacaacctttctttgtcattggttattgtgatctc 621  Q
    |||||   |   || ||||||||||||||||||||||| ||||||||    
T  16662913 atttcgactctggataacctttctttgtcattggttatcgtgatctc 16662867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 586 - 635
Target Start/End: Complemental strand, 12246316 - 12246267
Alignment:
Q  586 tgacaacctttctttgtcattggttattgtgatctcgtttgtattgccag 635  Q
    ||||||||||||||||| ||| |||||||| ||||| |||| ||||||||    
T  12246316 tgacaacctttctttgtaattagttattgtaatctcatttgaattgccag 12246267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 586 - 630
Target Start/End: Complemental strand, 16658427 - 16658383
Alignment:
Q  586 tgacaacctttctttgtcattggttattgtgatctcgtttgtatt 630  Q
    |||||| |||||||| ||||||||||| ||||||| |||||||||    
T  16658427 tgacaatctttctttttcattggttatggtgatcttgtttgtatt 16658383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 362 - 640
Target Start/End: Original strand, 30774289 - 30774567
Alignment:
Q  362 tgattcttcttatcaagcaaatttgcagccactgtaattgcaccatttatctttgtaacttctttagaagagagttttaatttgacatccttattcttca 461  Q
    ||||| ||||||||||||||||||| |||||||| ||||||| || | |||||| | | || || ||| || || ||||| || || |||||| |||| |    
T  30774289 tgattattcttatcaagcaaatttgtagccactgcaattgcatcagtgatctttttgagtttttgagatgatagctttaaatttacgtccttaatcttta 30774388  T
Q  462 gagcatttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttcagcacgatattcctcggcttcttg 561  Q
    || |||| |||||||||||||  |||  |||||||||||||||||||   | |||||||||||||||||||||||||||||| || ||    ||||||||    
T  30774389 gaccattcctcaacttgtaaatgcagcaatctaatgcattcattaccatagacttccttaggaatttctcatcttcagcacggtactctctagcttcttg 30774488  T
Q  562 aatcannnnnnnaatttcatatgctgacaacctttctttgtcattggttattgtgatctcgtttgtattgccagtggat 640  Q
    |||||       |||||| | |   || |||||||||||||| |||||||| |||||||| ||  ||||||||||||||    
T  30774489 aatcattttgttaatttcttctctggataacctttctttgtcgttggttatcgtgatctcattcatattgccagtggat 30774567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 427 - 536
Target Start/End: Original strand, 43743918 - 43744027
Alignment:
Q  427 agaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaat 526  Q
    |||||| || |||||||| |||||||||||||| | |||||| |||||||||||||| || |||||||||||||||||||| |  || ||||| || |||    
T  43743918 agaagaaagctttaatttaacatccttattctttacagcattcctcaacttgtaaacccattcatctaatgcattcattacattggctttcctaagaaat 43744017  T
Q  527 ttctcatctt 536  Q
    ||||||||||    
T  43744018 ttctcatctt 43744027  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 423 - 533
Target Start/End: Original strand, 43445783 - 43445894
Alignment:
Q  423 ctttagaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaa-cacagtcatctaatgcattcattacctccgccttcctta 521  Q
    ||||||| ||||| |||||||| | |||||||||||| | | |||| |||||| |||||| | || |||||||||||||||||||| |  |||||||| |    
T  43445783 ctttagacgagagctttaatttaatatccttattctttacaacattcctcaacctgtaaaacccattcatctaatgcattcattacattggccttcctaa 43445882  T
Q  522 ggaatttctcat 533  Q
    | ||||||||||    
T  43445883 gaaatttctcat 43445894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 211
Target Start/End: Original strand, 1767117 - 1767256
Alignment:
Q  71 gattattaactaaagcacaagagcctgatagggatcttaatttggaagcagtgttt-caaatatgctctactaaaactagaaaacaagacaaaacacaca 169  Q
    |||||||||||  ||||||||| ||  | ||||||||| || | ||||||  |||| |||||||| |  |||||||||| ||||||||| | || ||| |    
T  1767117 gattattaacttgagcacaagaaccataaagggatcttgatcttgaagcaaggttttcaaatatgtt--actaaaactaaaaaacaagaaagaaaacaga 1767214  T
Q  170 aacaatttaagtaacatgttccatgcagatttcatcataaac 211  Q
    ||||||||||||| ||||||| ||||| | || |||||||||    
T  1767215 aacaatttaagtagcatgttcaatgcaaacttgatcataaac 1767256  T

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Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 448 - 536
Target Start/End: Original strand, 28219041 - 28219129
Alignment:
Q  448 atccttattcttcagagcatttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatctt 536  Q
    |||||||||||| |||||||| |||||||||||||| |||||||||||||||||||| || |  ||||||||||| ||||| |||||||    
T  28219041 atccttattctttagagcattcctcaacttgtaaacgcagtcatctaatgcattcatgacattggccttccttagaaatttttcatctt 28219129  T

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Target: scaffold0248 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 17829 - 17757
Alignment:
Q  173 aatttaagtaacatgttccatgcagatttcatcataaacatcaatacttttagataatgataatcaacctaaa 245  Q
    |||||||||||||||||| ||||| |||| |  |||||| |||||| | ||||||||||||||| ||||||||    
T  17829 aatttaagtaacatgttcaatgcaaattttacaataaacttcaataatgttagataatgataattaacctaaa 17757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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