View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19604_low_11 (Length: 293)
Name: NF19604_low_11
Description: NF19604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19604_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 4 - 244
Target Start/End: Original strand, 24335050 - 24335289
Alignment:
| Q |
4 |
aggcctccattattagtttgaaatgttaaggaaaagaacattatggacctttctcatgtcaagtttctgcccactcatgaactgtgatcgtacgcttgtg |
103 |
Q |
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| T |
24335050 |
aggcctccattattagtttgaaatgttaaggaaaagaacattatggacctttctcacgtcaagtgtctgcccactcatgaactgtgatcgtacgtttgtg |
24335149 |
T |
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| Q |
104 |
acttcgtaagcattctagctggatttcgatgtaacatgtgaatcttcacactgtcattttgttttaagataaaacaatcaaagtaataagatcttgcatc |
203 |
Q |
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| T |
24335150 |
acttcgtaagcattctagctggatttcgatgtaacatgtgaatcttcacactgtcattttgtttcaagataaaacaatcaaagtaataagatcttggatc |
24335249 |
T |
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| Q |
204 |
gtagtataaaaataaacaaagaaatagaa-gggatggaaaac |
244 |
Q |
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| T |
24335250 |
gtagtataaaa--taacaaagaaatagaaggggatggaaaac |
24335289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 24336373 - 24336422
Alignment:
| Q |
146 |
tcttcacactgtcattttgttttaagataaaacaatcaaagtaataagat |
195 |
Q |
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| T |
24336373 |
tcttcacactgtcattttgttttaagataaaacaattaaagtaataagat |
24336422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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