View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19604_low_12 (Length: 281)
Name: NF19604_low_12
Description: NF19604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19604_low_12 |
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| [»] scaffold0366 (4 HSPs) |
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| [»] scaffold0459 (2 HSPs) |
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Alignment Details
Target: scaffold0366 (Bit Score: 98; Significance: 3e-48; HSPs: 4)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 184 - 281
Target Start/End: Complemental strand, 10207 - 10110
Alignment:
| Q |
184 |
agtaacgtaaatttgattttctacgatatattttaagtttgatttttatatataggctttttgtcaattcataaaatcaaccaatttctctctatcct |
281 |
Q |
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| T |
10207 |
agtaacgtaaatttgattttctacgatatattttaagtttgatttttatatataggctttttgtcaattcataaaatcaaccaatttctctctatcct |
10110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 181 - 281
Target Start/End: Complemental strand, 13876 - 13776
Alignment:
| Q |
181 |
cacagtaacgtaaatttgattttctacgatatattttaagtttgatttttatatataggctttttgtcaattcataaaatcaaccaatttctctctatcc |
280 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
13876 |
cacagtgacgtaaatttgattttctacgatatattttaagtttgatttttatatataggctttttgtcaattcataaaatcaaccaatttctctctctcc |
13777 |
T |
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| Q |
281 |
t |
281 |
Q |
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| T |
13776 |
t |
13776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 10390 - 10301
Alignment:
| Q |
1 |
aaaggcaacctcaacaaactactatgtagtaagtgctagtgagttgaacatgctggattgcaagattaaacaaaagttggttaccttctc |
90 |
Q |
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| T |
10390 |
aaaggcaacctcaccacactactatgtagtacgtgctagtgagttgaacatgctggattgcaagattaaacaaaagttggttaccttctc |
10301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 14056 - 13967
Alignment:
| Q |
1 |
aaaggcaacctcaacaaactactatgtagtaagtgctagtgagttgaacatgctggattgcaagattaaacaaaagttggttaccttctc |
90 |
Q |
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| T |
14056 |
aaaggcaacctcaccacactactatgtagtacgtgctagtgagttgaacatgctggattgcaagattaaacaaaagttggttaccttctc |
13967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0459 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: scaffold0459
Description:
Target: scaffold0459; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 184 - 281
Target Start/End: Complemental strand, 12566 - 12469
Alignment:
| Q |
184 |
agtaacgtaaatttgattttctacgatatattttaagtttgatttttatatataggctttttgtcaattcataaaatcaaccaatttctctctatcct |
281 |
Q |
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| T |
12566 |
agtaacgtaaatttgattttctacgatatattttaagtttgatttttatatataggctttttgtcaattcataaaatcaaccaatttctctctctcct |
12469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0459; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 12749 - 12660
Alignment:
| Q |
1 |
aaaggcaacctcaacaaactactatgtagtaagtgctagtgagttgaacatgctggattgcaagattaaacaaaagttggttaccttctc |
90 |
Q |
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||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12749 |
aaaggcaacctcaccacactactatgtagtacgtgctagtgagttgaacatgctggattgcaagattaaacaaaagttggttaccttctc |
12660 |
T |
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