View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19604_low_15 (Length: 250)
Name: NF19604_low_15
Description: NF19604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19604_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 16224412 - 16224174
Alignment:
| Q |
1 |
aatgtgagtgagtacattaccacaaacccaattctattctcttccttgctccaatgatcatatggtattgcaagagcaaacatgaaaacagtcatgaaga |
100 |
Q |
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| T |
16224412 |
aatgtgagtgagtatattacaacaaacccaattctattctcttccttgctccaatgatcatatggtatggcaagtgcaaacatgaaaacagtcatgaaga |
16224313 |
T |
|
| Q |
101 |
agaatcccatcatttgaatagcgaaacgacccatgtgatcgataaacgctactgtgaaccagtaacccggaacagtactgcacaacgcaataagtgtttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16224312 |
agaatcccatcatttgaatagcgaaacgacccatgtgatcgataaacgctactgtgaaccagtaacccggaacagtactgcacaacgcaataagtgtttg |
16224213 |
T |
|
| Q |
201 |
tgctcttgcaatcttgtaaacctcatgaattgcattcat |
239 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
16224212 |
tgctcttgcaatcttgtaaacctcatgaattgcattcat |
16224174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 16185022 - 16184784
Alignment:
| Q |
1 |
aatgtgagtgagtacattaccacaaacccaattctattctcttccttgctccaatgatcatatggtattgcaagagcaaacatgaaaacagtcatgaaga |
100 |
Q |
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| T |
16185022 |
aatgtgagtgagtacattacaacaaacccaattctattctcttccttgctccaatgatcatatggtatggcaagtgcaaacatgaaaacagtcatgaaga |
16184923 |
T |
|
| Q |
101 |
agaatcccatcatttgaatagcgaaacgacccatgtgatcgataaacgctactgtgaaccagtaacccggaacagtactgcacaacgcaataagtgtttg |
200 |
Q |
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| T |
16184922 |
agaatcccatcatttgaatagcgaaacgacccatgtgatcgataaatgctaccgtgaaccagtaacccggaacagtactgcacaacgcaataagtgtttg |
16184823 |
T |
|
| Q |
201 |
tgctcttgcaatcttgtaaacctcatgaattgcattcat |
239 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
16184822 |
tgctcttgcaatcttgtaaacctcatgaattgcattcat |
16184784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 16174340 - 16174578
Alignment:
| Q |
1 |
aatgtgagtgagtacattaccacaaacccaattctattctcttccttgctccaatgatcatatggtattgcaagagcaaacatgaaaacagtcatgaaga |
100 |
Q |
| |
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||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
16174340 |
aatgttagtgagtacattacaacaaacccaattctattctcttccttgctccaatgatcatatggtatggcaagagcaaacatgaaaacagtcatgaaga |
16174439 |
T |
|
| Q |
101 |
agaatcccatcatttgaatagcgaaacgacccatgtgatcgataaacgctactgtgaaccagtaacccggaacagtactgcacaacgcaataagtgtttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
16174440 |
agaatcccatcatttgaatagcgaaacgacccatgtgatcgataaatgcgactgtgaaccagtagcccggaacagtactgcacaacgcaataagtgtttg |
16174539 |
T |
|
| Q |
201 |
tgctcttgcaatcttgtaaacctcatgaattgcattcat |
239 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
16174540 |
tgctcttgcaatcttgtaaacctcatgaattgcattcat |
16174578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 9 - 213
Target Start/End: Complemental strand, 33110114 - 33109910
Alignment:
| Q |
9 |
tgagtacattaccacaaacccaattctattctcttccttgctccaatgatcatatggtattgcaagagcaaacatgaaaacagtcatgaagaagaatccc |
108 |
Q |
| |
|
|||||||||||| |||||||||||||| || |||| ||| ||||||||||||| ||||| || |||||||||||||| || |||||||||||||| ||| |
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|
| T |
33110114 |
tgagtacattacaacaaacccaattctgttttctttcttagtccaatgatcataaggtatagctagagcaaacatgaagacggtcatgaagaagaaaccc |
33110015 |
T |
|
| Q |
109 |
atcatttgaatagcgaaacgacccatgtgatcgataaacgctactgtgaaccagtaacccggaacagtactgcacaacgcaataagtgtttgtgctcttg |
208 |
Q |
| |
|
|||| ||| || || ||||||||||||| ||||||||| || ||||| ||||||||||| || || ||||||||||| || ||||| ||||||||||||| |
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| T |
33110014 |
atcaattggatcgcaaaacgacccatgtaatcgataaatgccactgtaaaccagtaacctggcactgtactgcacaatgctataagggtttgtgctcttg |
33109915 |
T |
|
| Q |
209 |
caatc |
213 |
Q |
| |
|
||||| |
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|
| T |
33109914 |
caatc |
33109910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 50 - 240
Target Start/End: Original strand, 30619917 - 30620107
Alignment:
| Q |
50 |
tccaatgatcatatggtattgcaagagcaaacatgaaaacagtcatgaagaagaatcccatcatttgaatagcgaaacgacccatgtgatcgataaacgc |
149 |
Q |
| |
|
|||| |||||||| || || ||||| |||||||| ||||| ||||| ||||| |||||||| | ||||||| ||| | || || ||| || || || |
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| T |
30619917 |
tccagtgatcataaggaatagcaagtgcaaacataaaaactgtcataaagaaaaatcccattaactgaatagtgaaccttccaattctatcaatgaatgc |
30620016 |
T |
|
| Q |
150 |
tactgtgaaccagtaacccggaacagtactgcacaacgcaataagtgtttgtgctcttgcaatcttgtaaacctcatgaattgcattcatc |
240 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| || |||||||||||||| || || ||||| || |||||||| | || |||||||||| |
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|
| T |
30620017 |
aactgtgaaccagtaaccaggaactgtactgcataatgcaataagtgtttgcgccctcgcaattttataaacctcttcaagtgcattcatc |
30620107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 33116013 - 33115940
Alignment:
| Q |
151 |
actgtgaaccagtaacccggaacagtactgcacaacgcaataagtgtttgtgctcttgcaatcttgtaaacctc |
224 |
Q |
| |
|
||||||||||||||||| |||||||||||||| | || || ||||| |||||||| ||||||||||||||||| |
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|
| T |
33116013 |
actgtgaaccagtaaccaggaacagtactgcaaagtgctatgagtgtctgtgctctagcaatcttgtaaacctc |
33115940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 200
Target Start/End: Original strand, 30615189 - 30615313
Alignment:
| Q |
76 |
gcaaacatgaaaacagtcatgaagaagaatcccatcatttgaatagcgaaacgacccatgtgatcgataaacgctactgtgaaccagtaacccggaacag |
175 |
Q |
| |
|
|||||||| ||||| ||||| |||||||||||||| | ||||||| ||| | ||||| ||| || | || ||||||||||||||||| ||||| | |
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|
| T |
30615189 |
gcaaacataaaaactgtcataaagaagaatcccattaactgaatagtgaaccttcccattctatcaatgagtgccactgtgaaccagtaaccaggaactg |
30615288 |
T |
|
| Q |
176 |
tactgcacaacgcaataagtgtttg |
200 |
Q |
| |
|
|||| || || |||||||||||||| |
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|
| T |
30615289 |
tactacataaagcaataagtgtttg |
30615313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 38894155 - 38894093
Alignment:
| Q |
50 |
tccaatgatcatatggtattgcaagagcaaacatgaaaacagtcatgaagaagaatcccatca |
112 |
Q |
| |
|
|||| ||||||||||| || ||||||||||||||||| |||||||| |||||||||||||||| |
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|
| T |
38894155 |
tccagtgatcatatggaatggcaagagcaaacatgaagacagtcataaagaagaatcccatca |
38894093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 239
Target Start/End: Complemental strand, 38894048 - 38893966
Alignment:
| Q |
157 |
aaccagtaacccggaacagtactgcacaacgcaataagtgtttgtgctcttgcaatcttgtaaacctcatgaattgcattcat |
239 |
Q |
| |
|
|||||||| || ||||| |||||||| | |||||||||||||| |||||||| || ||||||||||| | || ||||||||| |
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|
| T |
38894048 |
aaccagtagcctggaactgtactgcatagagcaataagtgtttgagctcttgcgattttgtaaacctcctcaagtgcattcat |
38893966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 239
Target Start/End: Complemental strand, 38884862 - 38884780
Alignment:
| Q |
157 |
aaccagtaacccggaacagtactgcacaacgcaataagtgtttgtgctcttgcaatcttgtaaacctcatgaattgcattcat |
239 |
Q |
| |
|
||||| ||||| ||||| |||||||| | |||||||||||||| |||| ||||| ||||||||||| | || ||||||||| |
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|
| T |
38884862 |
aaccaataacctggaactgtactgcatagagcaataagtgtttgagctcgagcaattttgtaaacctcctcaagtgcattcat |
38884780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 112
Target Start/End: Complemental strand, 38884949 - 38884907
Alignment:
| Q |
70 |
gcaagagcaaacatgaaaacagtcatgaagaagaatcccatca |
112 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||||| |
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|
| T |
38884949 |
gcaagagcaaacatgaaggcagtcataaagaagaatcccatca |
38884907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 173
Target Start/End: Original strand, 37314972 - 37315095
Alignment:
| Q |
50 |
tccaatgatcatatggtattgcaagagcaaacatgaaaacagtcatgaagaagaatcccatcatttgaatagcgaaacgacccatgtgatcgataaacgc |
149 |
Q |
| |
|
||||||||||||| || || || || ||||||||||| |||||||| |||||||||||||| | |||||| || |||||||| || |||||||| || |
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|
| T |
37314972 |
tccaatgatcatacggaatagcgagcgcaaacatgaacacagtcataaagaagaatcccattagttgaattgcaaaacgaccaataacgtcgataaaagc |
37315071 |
T |
|
| Q |
150 |
tactgtgaaccagtaacccggaac |
173 |
Q |
| |
|
|| ||||||||||| || ||||| |
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|
| T |
37315072 |
caccgtgaaccagtatccgggaac |
37315095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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