View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19604_low_18 (Length: 237)
Name: NF19604_low_18
Description: NF19604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19604_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 16174318 - 16174097
Alignment:
| Q |
1 |
aaatgctacgacatttgttgtaccggcagagatttttccggctaggttaaggtctacctgtcatggaatatcagctgctgcaggaaaggcaggagcaatt |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16174318 |
aaatgctacaacatttgttgtaccggcagagatttttccggctaggttaaggtctacctgtcatggaatatcagctgctgcaggaaaggcaggagcaatt |
16174219 |
T |
|
| Q |
101 |
gttggtgcatttggattcttgtatgctgcacaaagtaaagatcctacaaagacagataaagggtatccaaccggtattgggattaagaactctcttatca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
16174218 |
gttggtgcatttggattcttgtatgctgcacaaagtaaagatcctaccaagaccgataaagggtacccaaccggtattgggattaagaactctcttatca |
16174119 |
T |
|
| Q |
201 |
tgcttggtgtgatcaactttgt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
16174118 |
tgcttggtgtgatcaactttgt |
16174097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 16185044 - 16185265
Alignment:
| Q |
1 |
aaatgctacgacatttgttgtaccggcagagatttttccggctaggttaaggtctacctgtcatggaatatcagctgctgcaggaaaggcaggagcaatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
16185044 |
aaatgctacgacatttgttgtaccggcagagatttttccggctaggctaaggtctacctgtcatggaatctcagctgctgcaggaaaggcaggagcaatt |
16185143 |
T |
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| Q |
101 |
gttggtgcatttggattcttgtatgctgcacaaagtaaagatcctacaaagacagataaagggtatccaaccggtattgggattaagaactctcttatca |
200 |
Q |
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| T |
16185144 |
gttggtgcatttggattcttgtatgctgcacaaagtaaagatcctaccaagaccgataaagggtatccaaccggtattgggattaagaactctcttatca |
16185243 |
T |
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| Q |
201 |
tgcttggtgtgatcaactttgt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
16185244 |
tgcttggtgtgatcaactttgt |
16185265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 16224434 - 16224655
Alignment:
| Q |
1 |
aaatgctacgacatttgttgtaccggcagagatttttccggctaggttaaggtctacctgtcatggaatatcagctgctgcaggaaaggcaggagcaatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
16224434 |
aaatgctacgacatttgttgtaccggcagagatttttccggctaggttaaggtctacctgtcatggaatctcagctgctgcaggaaaggcaggagcaatt |
16224533 |
T |
|
| Q |
101 |
gttggtgcatttggattcttgtatgctgcacaaagtaaagatcctacaaagacagataaagggtatccaaccggtattgggattaagaactctcttatca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
16224534 |
gttggtgcatttggattcttgtatgctgcacaaagtaaagatcctaccaagaccgataaagggtacccaaccggtattgggattaagaactctcttatca |
16224633 |
T |
|
| Q |
201 |
tgcttggtgtgatcaactttgt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
16224634 |
tgcttggtgtgatcaactttgt |
16224655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 33110144 - 33110362
Alignment:
| Q |
1 |
aaatgctacgacatttgttgtaccggcagagatttttccggctaggttaaggtctacctgtcatggaatatcagctgctgcaggaaaggcaggagcaatt |
100 |
Q |
| |
|
||||||||| ||||||||||| || || |||||||| ||||| ||| | || ||||||||||| ||||| |||||||||||||||||||| ||||||||| |
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| T |
33110144 |
aaatgctaccacatttgttgttccagccgagattttcccggcaaggcttagatctacctgtcacggaatctcagctgctgcaggaaaggctggagcaatt |
33110243 |
T |
|
| Q |
101 |
gttggtgcatttggattcttgtatgctgcacaaagtaaagatcctacaaagacagataaagggtatccaaccggtattgggattaagaactctcttatca |
200 |
Q |
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||||||||||||||||| || ||||||||||||||||| ||||| || ||||| ||| | || || ||||| |||||||| || |||||||| || || |
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| T |
33110244 |
gttggtgcatttggatttttatatgctgcacaaagtaaggatccgacgaagactgatcatggttacccaactggtattggtatcaagaactccctcattg |
33110343 |
T |
|
| Q |
201 |
tgcttggtgtgatcaactt |
219 |
Q |
| |
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|||||||||| ||||||| |
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| T |
33110344 |
tgcttggtgttgtcaactt |
33110362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 33116185 - 33116311
Alignment:
| Q |
1 |
aaatgctacgacatttgttgtaccggcagagatttttccggctaggttaaggtctacctgtcatggaatatcagctgctgcaggaaaggcaggagcaatt |
100 |
Q |
| |
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|||||| ||||| ||||| || |||||||||||||| ||||| ||| ||||||| || |||||||| ||||| |||||||| ||||| || |||||||| |
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| T |
33116185 |
aaatgcaacgacgtttgtggttccggcagagattttcccggcaaggctaaggtcaacatgtcatggtatatccgctgctgctggaaaagctggagcaatg |
33116284 |
T |
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| Q |
101 |
gttggtgcatttggattcttgtatgct |
127 |
Q |
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|| ||||| ||||| |||||||||||| |
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| T |
33116285 |
gtaggtgcttttggtttcttgtatgct |
33116311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 211
Target Start/End: Complemental strand, 37314888 - 37314691
Alignment:
| Q |
14 |
tttgttgtaccggcagagatttttccggctaggttaaggtctacctgtcatggaatatcagctgctgcaggaaaggcaggagcaattgttggtgcatttg |
113 |
Q |
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||||||||||| || |||||||| ||||||||||| |||||||| |||||||| ||||| |||| ||||| || || ||||||||| | |||||||||| |
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| T |
37314888 |
tttgttgtacctgccgagattttcccggctaggttgaggtctacatgtcatggtatatcctctgcagcagggaaagctggagcaattataggtgcatttg |
37314789 |
T |
|
| Q |
114 |
gattcttgtatgctgcacaaagtaaagatcctacaaagacagataaagggtatccaaccggtattgggattaagaactctcttatcatgcttggtgtg |
211 |
Q |
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||||||| |||||| |||||||||| ||||| | ||||| |||| |||||| || | |||||||| || |||||| ||||||| |||||| |||| |
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| T |
37314788 |
gattcttatatgcttcacaaagtaaggatccaaaaaagagagatgcagggtaccctgctggtattggaatgaagaacactcttattttgcttgctgtg |
37314691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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