View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19604_low_19 (Length: 209)
Name: NF19604_low_19
Description: NF19604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19604_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 77; Significance: 6e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 112 - 192
Target Start/End: Complemental strand, 43012431 - 43012351
Alignment:
| Q |
112 |
ccttgtacatttgaaggtataagttagcggaggagaacatgttgaaggttatgaaggaaaaaggagctgtgtatggaaact |
192 |
Q |
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| T |
43012431 |
ccttgtacatttgaaggtataagttagcagaggagaacatgttgaaggttatgaaggaaaaaggagctgtgtatggaaact |
43012351 |
T |
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Target: chr8 (Bit Score: 76; Significance: 2e-35; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 113 - 192
Target Start/End: Complemental strand, 18220654 - 18220575
Alignment:
| Q |
113 |
cttgtacatttgaaggtataagttagcggaggagaacatgttgaaggttatgaaggaaaaaggagctgtgtatggaaact |
192 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18220654 |
cttgtacatttgaaggtataagttagcagaggagaacatgttgaaggttatgaaggaaaaaggagctgtgtatggaaact |
18220575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 18220749 - 18220719
Alignment:
| Q |
18 |
tttttcagtacacagttcagttttccacttg |
48 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
18220749 |
tttttcagtacacagttcagttttccacttg |
18220719 |
T |
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