View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19604_low_2 (Length: 650)
Name: NF19604_low_2
Description: NF19604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19604_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 18 - 408
Target Start/End: Complemental strand, 12283667 - 12283277
Alignment:
| Q |
18 |
tttcttaacataacatgtatgttagtcttggtgaaagaattgtgctcatgaatttagttcacggtagtgtacccattttcttcctcccattcatgataat |
117 |
Q |
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| T |
12283667 |
tttcttgacataacatgtatgttagtcttggtgaaagaattgtgctcatgaatttagttctcggtagtgtacccattttcttcctcccattcatgataat |
12283568 |
T |
|
| Q |
118 |
tccggtcaatgtttggaaattggtggttcaaataggagatattctaagggtggcttgaagagcttgaagaaaattgcattttagtctacttcttattagc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
12283567 |
tccggtcaatgtttggaaattggtggttcaaataggagatattctaagggtggcttgaagagcttgaggaaaattgcattttagtctacttcttattagc |
12283468 |
T |
|
| Q |
218 |
tgttaatttttcttttcgagatgttaaattcaattagaaaataaacaagaacttacaaagaaaacaaataagtaactctatgttaataatgttggtattt |
317 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12283467 |
tgttaatttttctttccgagatgttaaattcaattagaaaataaacaggaacttacaaagaaaacaaataagtaactctatgttaataatgttggtattt |
12283368 |
T |
|
| Q |
318 |
tcaagaaattaaaacttgagaaatgaaatagtacaatagtattgtatgcccccattcaaaaattgacttcatcaatctttgacaagcatgc |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
12283367 |
tcaagaaattaaaacttgagaaatgaaatagtacaatagtattgtatgcccccattcaaaaattgactttatcaatctttgacaagcatgc |
12283277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 450 - 635
Target Start/End: Complemental strand, 12283235 - 12283050
Alignment:
| Q |
450 |
gttagggtaattccaccaaaagggaaaaccaatagcaacaccattacagttcttgacaccaacatccattccagttaaccggccaccacaattctttcca |
549 |
Q |
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| T |
12283235 |
gttagggtaattccaccaaaagggaaaaccaatagcaacaccattacagttcttgacaccaacatccattccagttaaccggccaccacaattctttcca |
12283136 |
T |
|
| Q |
550 |
tgcatcaccgtttgcttctccgccacggtaactgatctttcctccggcacaaccaccctcacactgaaatgaataactccattttg |
635 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12283135 |
tgcatcaccgtttgcttctccgccacggtaactgatctttcctccggcacaaccaccctcacactgaaatgaataactccattttg |
12283050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 450 - 635
Target Start/End: Complemental strand, 12267512 - 12267324
Alignment:
| Q |
450 |
gttagggtaattccaccaaaagggaaaaccaatagcaacaccattacagttcttgacaccaaca---tccattccagttaaccggccaccacaattcttt |
546 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
12267512 |
gttagggtaattccatcaaaagggaaaaccaatagcaacaccattagagttcttgacaccaacaatatccattccagttaaccggccaccacaattcttt |
12267413 |
T |
|
| Q |
547 |
ccatgcatcaccgtttgcttctccgccacggtaactgatctttcctccggcacaaccaccctcacactgaaatgaataactccattttg |
635 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
12267412 |
ccatgcatcaccgtttgcttctccgccacggtaaccgatctttcctccggcacaaccaccctcacactaaaatgaataaccccattttg |
12267324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 188 - 365
Target Start/End: Complemental strand, 12267855 - 12267677
Alignment:
| Q |
188 |
aaattgcattttagtctacttcttattagctgttaatttttcttttcgagatgttaaattcaattagaa---aataaacaagaacttacaaagaaaacaa |
284 |
Q |
| |
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|||||| || ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| || ||| || || || ||||||||||||||| |
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| T |
12267855 |
aaattgaatattagtctactttttattagccgttaatttttcttttcgagatgttaaattcaattataatacaatgaagaacaaattacaaagaaaacaa |
12267756 |
T |
|
| Q |
285 |
ataagtaactctatgttaataatgttggtattttcaagaaattaaaacttgagaaatgaaatagtacaatagtattgtatg |
365 |
Q |
| |
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||||||||||| |||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
12267755 |
ataagtaactc--tgttaaaaatgttgttatttacaagaaattaaaacttgagaaatgaaatagtacaacagtattctatg |
12267677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 454 - 635
Target Start/End: Complemental strand, 12257414 - 12257230
Alignment:
| Q |
454 |
gggtaattccaccaaaagggaaaaccaatagcaacaccattacagttcttgacaccaacatccattccagttaaccggccaccacaattctttccatgca |
553 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||||| ||| |||| |||||||||||||||||||||||| |||||| |||||||||||| | |
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| T |
12257414 |
gggtaattccaccaaaacggaataccaatagcaacaccattagagtccttggtaccaacatccattccagttaaccgaccaccataattctttccatccg |
12257315 |
T |
|
| Q |
554 |
tcaccgtttgcttct---ccgccacggtaactgatctttcctccggcacaaccaccctcacactgaaatgaataactccattttg |
635 |
Q |
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|| || ||||| | ||||||||||| | ||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12257314 |
cgacagtctgcttttcaaccgccacggtagccgatgttttctccggcacaaccaccctcacactgaaatgaataactccattttg |
12257230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 454 - 635
Target Start/End: Complemental strand, 12264806 - 12264622
Alignment:
| Q |
454 |
gggtaattccaccaaaagggaaaaccaatagcaacaccattacagttcttgacaccaacatccattccagttaaccggccaccacaattctttccatgca |
553 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||||| ||| |||| |||||||||||||||||||||||| |||||| |||||||||||| | |
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| T |
12264806 |
gggtaattccaccaaaacggaataccaatagcaacaccattagagtccttggtaccaacatccattccagttaaccgaccaccataattctttccatccg |
12264707 |
T |
|
| Q |
554 |
tcaccgtttgcttct---ccgccacggtaactgatctttcctccggcacaaccaccctcacactgaaatgaataactccattttg |
635 |
Q |
| |
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|| || ||||| | ||||||||||| | ||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12264706 |
cgacagtctgcttttcaaccgccacggtagccgatgttttctccggcacaaccaccctcacactgaaatgaataactccattttg |
12264622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 450 - 635
Target Start/End: Complemental strand, 12271419 - 12271234
Alignment:
| Q |
450 |
gttagggtaattccaccaaaagggaaaaccaatagcaacaccattacagttcttgacaccaacatccattccagttaaccggccaccacaattctttcca |
549 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||| || |||||||| ||||||| ||||||||| ||||||||||||||| ||||| || |||||||| |
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| T |
12271419 |
gttagggtaattccaccaaacaggaataccaataacagcaccattagagttcttcgtaccaacatcaattccagttaaccggtcaccataactctttcca |
12271320 |
T |
|
| Q |
550 |
tgcatcaccgtttgcttctccgccacggtaactgatctttcctccggcacaaccaccctcacactgaaatgaataactccattttg |
635 |
Q |
| |
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| | ||||| ||||||||||||||||||||| | ||||| ||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
12271319 |
tccgccaccggttgcttctccgccacggtaaccgttctttgctctggcacaaccaccctcacaccaaaatgaataactccattttg |
12271234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 454 - 635
Target Start/End: Complemental strand, 12288081 - 12287900
Alignment:
| Q |
454 |
gggtaattccaccaaaagggaaaaccaatagcaacaccattacagttcttgacaccaacatccattccagttaaccggccaccacaattctttccatgca |
553 |
Q |
| |
|
||||||||||||| ||| |||| ||||||| || | |||||| |||||||| ||||||||| |||||||||||||| ||||| || |||| |||| | |
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| T |
12288081 |
gggtaattccacctaaaaggaataccaataacacctccattagagttcttggtaccaacatcaattccagttaaccgatcaccataactcttcccatccg |
12287982 |
T |
|
| Q |
554 |
tcaccgtttgcttctccgccacggtaactgatctttcctccggcacaaccaccctcacactgaaatgaataactccattttg |
635 |
Q |
| |
|
|| |||| ||| |||||||| ||||| ||||||||||| ||| |||||||| |||||| |||||||||||||||||||| |
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|
| T |
12287981 |
ccagtgtttccttttccgccaccgtaaccgatctttcctctggcgcaaccaccttcacaccaaaatgaataactccattttg |
12287900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 452 - 635
Target Start/End: Complemental strand, 29198139 - 29197956
Alignment:
| Q |
452 |
tagggtaattccaccaaaagggaaaaccaatagcaacaccattacagttcttgacaccaacatccattccagttaaccggccaccacaattctttccatg |
551 |
Q |
| |
|
|||||||||||||||||| |||| ||||||| |||||| |||| |||||||| ||||||||| |||||||||||||| ||||| || ||||| || |
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| T |
29198139 |
tagggtaattccaccaaacaggaataccaataacaacactattagagttcttggtaccaacatcaattccagttaaccgatcaccataactctttttatc |
29198040 |
T |
|
| Q |
552 |
catcaccgtttgcttctccgccacggtaactgatctttcctccggcacaaccaccctcacactgaaatgaataactccattttg |
635 |
Q |
| |
|
| |||| || | | |||||||||| ||||||| |||||||| |||||||||||||| |||||||||||||||||||| |
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|
| T |
29198039 |
tgccgttgttttatttttcaccacggtaaccgatcttttctccggcataaccaccctcacaccaaaatgaataactccattttg |
29197956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 249 - 361
Target Start/End: Complemental strand, 29198405 - 29198290
Alignment:
| Q |
249 |
aattagaaaataaacaagaacttacaaagaaaacaaa---taagtaactctatgttaataatgttggtattttcaagaaattaaaacttgagaaatgaaa |
345 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||| || ||| ||| ||||||||| ||||||||||||| ||| |||||||||| |||||||||||| |
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| T |
29198405 |
aattagaaaataaacaataacttccaaagaaaaggaaaactaattaagtctatgttaccaatgttggtatttacaataaattaaaacgtgagaaatgaaa |
29198306 |
T |
|
| Q |
346 |
tagtacaatagtattg |
361 |
Q |
| |
|
|||||| | ||||||| |
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|
| T |
29198305 |
tagtaccacagtattg |
29198290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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