View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19604_low_3 (Length: 524)

Name: NF19604_low_3
Description: NF19604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19604_low_3
NF19604_low_3
[»] chr2 (7 HSPs)
chr2 (301-508)||(21432309-21432518)
chr2 (160-258)||(21432197-21432295)
chr2 (243-322)||(27100069-27100147)
chr2 (22-96)||(21432111-21432185)
chr2 (449-502)||(27099905-27099958)
chr2 (345-403)||(27099973-27100029)
chr2 (444-486)||(26988428-26988470)
[»] chr6 (1 HSPs)
chr6 (444-486)||(34690504-34690546)


Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-103; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 301 - 508
Target Start/End: Original strand, 21432309 - 21432518
Alignment:
Q  301 aagggagatggagtatttgaactg--agagttagaaataaggatttggtgctgaattgcttaagagattagctctggatcgagggaaatgtagttaatag 398  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21432309 aagggagatggagtatttgaactgtgagagttagaaataaggatttggtgctgaattgcttaagagattagctctggatcgagggaaatgtagttaatag 21432408  T
Q  399 ttgatgagcttgaagctgtaactaactaaatagtgaagagaagaggttgtaagtcagaattggaacactctagaaattagcactattgtatcattcttgg 498  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  21432409 ttgatgagcttgaagctgtaactaactaaatagtgaatagaagaggttgtaagtcagaattggaacactctagaacttagcactattgtatcattcttgg 21432508  T
Q  499 gagagtattg 508  Q
    ||||||||||    
T  21432509 gagagtattg 21432518  T

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Target: chr2; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 160 - 258
Target Start/End: Original strand, 21432197 - 21432295
Alignment:
Q  160 atgaatgatgtcgtaagatacgaccttatttcagcaagtttgttctactattttttatgatatcctcatattttgcagaaactcggaagaacacctaga 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21432197 atgaatgatgtcgtaagatacgaccttatttcagcaagtttgttctactattttttatgatatcctcatattttgcagaaactcggaagaacacctaga 21432295  T

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Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 243 - 322
Target Start/End: Complemental strand, 27100147 - 27100069
Alignment:
Q  243 cggaagaacacctagaccactggagcaaggtgttgttattgttgtgtgaatttgcagtaagggagatggagtatttgaac 322  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| || |||||||||||||||||||    
T  27100147 cggaagaacacctagaccactggagcaaggtgttg-tattgtcgtgtgaatttgcagcaatggagatggagtatttgaac 27100069  T

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Target: chr2; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 21432111 - 21432185
Alignment:
Q  22 tattcctatctattgtgatgagttctcacatatacaactttctagagaatgtaatctctcacgaggtctattagg 96  Q
    ||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||| |||  ||||||||||||    
T  21432111 tattcgtatctattgtgattagttctcacatatacaacattctagagaatgtaatctgtcattaggtctattagg 21432185  T

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Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 449 - 502
Target Start/End: Complemental strand, 27099958 - 27099905
Alignment:
Q  449 aagtcagaattggaacactctagaaattagcactattgtatcattcttgggaga 502  Q
    ||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||    
T  27099958 aagtcagaattgggacactctagaatttagccctattgtatcattcttgggaga 27099905  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 403
Target Start/End: Complemental strand, 27100029 - 27099973
Alignment:
Q  345 ggtgctgaattgcttaagagattagctctggatcgagggaaatgtagttaatagttgat 403  Q
    ||||||||||| |||||||||||||||||  |  |||||||||||| ||||||||||||    
T  27100029 ggtgctgaattacttaagagattagctct--agggagggaaatgtaattaatagttgat 27099973  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 444 - 486
Target Start/End: Original strand, 26988428 - 26988470
Alignment:
Q  444 gttgtaagtcagaattggaacactctagaaattagcactattg 486  Q
    |||||||||||||||||| ||| ||||||| ||||||||||||    
T  26988428 gttgtaagtcagaattgggacaatctagaatttagcactattg 26988470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 444 - 486
Target Start/End: Original strand, 34690504 - 34690546
Alignment:
Q  444 gttgtaagtcagaattggaacactctagaaattagcactattg 486  Q
    |||||||||||||||||| ||| ||||||| ||||||||||||    
T  34690504 gttgtaagtcagaattgggacagtctagaatttagcactattg 34690546  T

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