View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19604_low_4 (Length: 492)
Name: NF19604_low_4
Description: NF19604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19604_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 192 - 484
Target Start/End: Original strand, 45652771 - 45653063
Alignment:
| Q |
192 |
aattcgcacaacaccagttctattgaacaaggaacttggtgtttattctcccaacctcaatttcaactctagtatcccaacacatggccataaaaagatg |
291 |
Q |
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| T |
45652771 |
aattcacacaacgccagttctattgaacaaggaacttggtgtttattctctcaacctcaatttcaactctagtatcccaacacatggccataaaaagatg |
45652870 |
T |
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| Q |
292 |
gttttttgtgttctttccaactttcattatgaggtatggaaattgtggtgagaggaattactggtttgcaattattatgttgttgacaaaaccttccaat |
391 |
Q |
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| T |
45652871 |
gttttttgtgttctttccaactttcattatgaggtatggaaattgtggtgagaggaattattggtttgcaattattatgttgttgacaaaaccttccaat |
45652970 |
T |
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| Q |
392 |
aggaattcacctataatagtccaagatggtatgttacgatggattgctaatgaagaaaagtgaagggtacccataggccctatgtcctttgct |
484 |
Q |
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| T |
45652971 |
aggaattcacctataatagtccaagatggtatgttacgatggattgctaatgaagaaaagtgaagggtacccataggccctatgtcctttgct |
45653063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 45652561 - 45652757
Alignment:
| Q |
18 |
aataggaacattaaatcaaacattaaacgccacttgaaaagaaacagatgaatatcatttagcccaagcccaaagttcggccgataatggtgtgcaagtg |
117 |
Q |
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| T |
45652561 |
aatagaaacattaaatcaaacattaaacgacacttgaaaagaaacagatgaatatcatttagcccaagcccaaagttcggccgataatggtgtgcaagtg |
45652660 |
T |
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| Q |
118 |
acatatgtattttcgcagataatcactttattcatacatgtgtgttcaatgtaaaactttcannnnnnnnattcaattcgcacaacaccagttctatt |
215 |
Q |
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| T |
45652661 |
acatatgtattttcgcgagtaatcactttattcatacatgtgtgttcaatgtaaaactttca-tttttttattcaattcacacaacaccagttctatt |
45652757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 231 - 324
Target Start/End: Original strand, 45645080 - 45645174
Alignment:
| Q |
231 |
tgtttattctcccaacctc-aatttcaactctagtatcccaacacatggccataaaaagatggttttttgtgttctttccaactttcattatgag |
324 |
Q |
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| T |
45645080 |
tgtttattcttccaacttccaatttcaactctagtgtttcaacaaatggccatagaaagatggttatctctgttcttttcaaatttcattatgag |
45645174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 374 - 427
Target Start/End: Original strand, 45648516 - 45648569
Alignment:
| Q |
374 |
ttgacaaaaccttccaataggaattcacctataatagtccaagatggtatgtta |
427 |
Q |
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| T |
45648516 |
ttgacaaaaccttgcaacaggaattcacctataatagtccaagattgtacgtta |
45648569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 374 - 463
Target Start/End: Complemental strand, 1193522 - 1193437
Alignment:
| Q |
374 |
ttgacaaaaccttccaataggaattcacctataatagtccaagatggtatgttacgatggattgctaatgaagaaaagtgaagggtaccc |
463 |
Q |
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| T |
1193522 |
ttgacaaaacttttcaataggaattcatctataatagtccaagatgatatcttacgacg--tt--taatgaagaaaagtgaagggtaccc |
1193437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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