View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19604_low_6 (Length: 412)
Name: NF19604_low_6
Description: NF19604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19604_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 7625092 - 7625496
Alignment:
| Q |
1 |
tttctgtttgtaagagaactaggcctgatttatgctgaatttgaatttaactctagtctatcttcttttgtatttccattatcatgcttaattgtgttat |
100 |
Q |
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| T |
7625092 |
tttctgtttgtaagagaactaggcctgatttatgctgaatttgaatttaactctagtctatcttcttt-gtatttccattatcatgcttaattgtgttat |
7625190 |
T |
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| Q |
101 |
aatatgaattttcttagatgtataataaaggccacattagattaaatatttaaa-----------------ttgattaattatttataactctgatgaac |
183 |
Q |
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| T |
7625191 |
aatatgaattttcttagatgtataataaaggccacattagattaaatatttaaaaattgcatggattaacattgattaattatttataactctgatgaac |
7625290 |
T |
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| Q |
184 |
atttatatgttatttacggactgacatttatgaacatcaggtaaattaaaggatagttttatcctcatttttctctgaaatctatgaagcagcactgtct |
283 |
Q |
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| T |
7625291 |
atttatatgttgtttacggactgacatttatgaacatcaggtaaa-----ggatagttttatcctcatttttctctgaaatctatgaagcagcactgtct |
7625385 |
T |
|
| Q |
284 |
aaattgcacatattcaaggctatcgtagtagtgcttgacaaattatcaaattatgctcatttcatacttctcaaacactctaaacatgtcatttttataa |
383 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7625386 |
aaattgcacatattcaaggctatcatagtagtgcttgacaaattatcaaattatgctcatttcatacttctcaaacactctaaacatgtcatttttataa |
7625485 |
T |
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| Q |
384 |
gattgtgattt |
394 |
Q |
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| T |
7625486 |
gattgtgattt |
7625496 |
T |
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