View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19604_low_7 (Length: 372)

Name: NF19604_low_7
Description: NF19604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19604_low_7
NF19604_low_7
[»] chr1 (7 HSPs)
chr1 (13-315)||(3366209-3366511)
chr1 (13-315)||(3373915-3374217)
chr1 (13-270)||(3380087-3380343)
chr1 (139-261)||(1793987-1794110)
chr1 (13-163)||(4333569-4333718)
chr1 (77-118)||(6599716-6599757)
chr1 (46-100)||(3342696-3342750)
[»] chr2 (4 HSPs)
chr2 (13-259)||(20935994-20936240)
chr2 (19-163)||(20954332-20954475)
chr2 (60-164)||(39275232-39275335)
chr2 (139-230)||(20924414-20924505)
[»] chr4 (1 HSPs)
chr4 (13-232)||(21238802-21239020)


Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 13 - 315
Target Start/End: Complemental strand, 3366511 - 3366209
Alignment:
Q  13 tcacaatcatcttgtctagcataggaaaatagcgaagtagaaaccgaataaaatctagttccgatttgataccagagatgccatctattgtcacatgtcg 112  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3366511 tcacaatcatcttgtctagcataggagaatagcgaagtagaaaccgaataaaatctagttccgatttgataccagagatgccatctattgtcacatgtcg 3366412  T
Q  113 cactcgaatgggcatggcccggccctgaaaagatatcttaccaacaataggatgtgggagttaaaaggacagtctgctccacaaaccgtgcctacatgca 212  Q
    ||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3366411 cactcgaatgggcatggct-ggccctgaaaagatatcttacgaacaataggatgtgggagttaaaaggacagtctgctccacaaaccgtgcctacatgca 3366313  T
Q  213 atcgtagcaaattcatggatcaagggggaaaggtagcatgcataagagaaatgtaaagctcatt-aaaatttgaaggtaacattgtattgattggttaaa 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||    
T  3366312 atcgtagcaaattcatggatcaagggggaaaggtagcatgcataagagaaatataaagcgcattaaaaatttgaaggtaacattgtattgattggttaaa 3366213  T
Q  312 gatg 315  Q
    ||||    
T  3366212 gatg 3366209  T

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Target: chr1; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 13 - 315
Target Start/End: Complemental strand, 3374217 - 3373915
Alignment:
Q  13 tcacaatcatcttgtctagcataggaaaatagcgaagtagaaaccgaataaaatctagttccgatttgataccagagatgccatctattgtcacatgtcg 112  Q
    ||||||||||||| ||||||| |||| |||| ||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||| |    
T  3374217 tcacaatcatcttttctagcacaggagaatatcgaagtagaaaccgaataaaatctaattctgatctgataccagagatgccatctattgtcacatgttg 3374118  T
Q  113 cactcgaatgggcatggcccggccctgaaaagatatcttaccaacaataggatgtgggagttaaaaggacagtctgctccacaaaccgtgcctacatgca 212  Q
     ||| |||||||||||||  ||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||| ||| |||||||||||||||    
T  3374117 tacttgaatgggcatggct-ggccctgaaaagatatcttcccaacaataggatgtgggcgttaaaaggacagtctcctcctcaatccgtgcctacatgca 3374019  T
Q  213 atcgtagcaaattcatggatcaagggggaaaggtagcatgcataagagaaatgtaaagctcattaaaa-tttgaaggtaacattgtattgattggttaaa 311  Q
    || ||| |||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||| || ||||||||||||||||| |||| | |||    
T  3374018 attgtaacaaattcatggatcaaaggggaaaggtagcatgcataagagaaatataaagcgcattaaaacttagaaggtaacattgtattaattgataaaa 3373919  T
Q  312 gatg 315  Q
    ||||    
T  3373918 gatg 3373915  T

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Target: chr1; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 13 - 270
Target Start/End: Complemental strand, 3380343 - 3380087
Alignment:
Q  13 tcacaatcatcttgtctagcataggaaaatagcgaagtagaaaccgaataaaatctagttccgatttgataccagagatgccatctattgtcacatgtcg 112  Q
    ||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  3380343 tcacaatcatcttttctagcataggagaatagagaagtagaaaccgaataaaatctaattccgatttgataccagagatgtcatctattgtcacatgtcg 3380244  T
Q  113 cactcgaatgggcatggcccggccctgaaaagatatcttaccaacaataggatgtgggagttaaaaggacagtctgctccacaaaccgtgcctacatgca 212  Q
    |||||||||||| || | | |||| |||||||||| ||| |||||||||| ||||||||||||||| |||| || ||||| |||||||||||||||||||    
T  3380243 cactcgaatggg-attgactggccttgaaaagataacttcccaacaatagaatgtgggagttaaaatgacactcagctcctcaaaccgtgcctacatgca 3380145  T
Q  213 atcgtagcaaattcatggatcaagggggaaaggtagcatgcataagagaaatgtaaag 270  Q
    || ||  |||||||||||||||  || ||||| |||||||| |||||||||| |||||    
T  3380144 attgtcacaaattcatggatcacaggagaaagatagcatgcttaagagaaatataaag 3380087  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 261
Target Start/End: Complemental strand, 1794110 - 1793987
Alignment:
Q  139 gaaaagatatcttaccaacaataggatgtgggagttaaaaggacagtctgctccacaaaccgtgcctacatgcaatcgtagcaaattcatggatc-aagg 237  Q
    ||||||||||||| ||||||||||||   |   |||||| ||||| | | |||| ||| ||||||||||||||||| ||  |||||||||||||| ||||    
T  1794110 gaaaagatatcttcccaacaataggaatcgcttgttaaagggacaatttcctcctcaagccgtgcctacatgcaattgttacaaattcatggatcaaagg 1794011  T
Q  238 gggaaaggtagcatgcataagaga 261  Q
     |||||| ||| ||||||||||||    
T  1794010 aggaaagatagtatgcataagaga 1793987  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 13 - 163
Target Start/End: Original strand, 4333569 - 4333718
Alignment:
Q  13 tcacaatcatcttgtctagcataggaaaatagcgaagtagaaaccgaataaaatctagttccgatttgataccagagatgccatctattgtcacatgtcg 112  Q
    ||||||||||||| |||||||   || ||||  |||||||||| |  || |||| || ||| || | | ||||||||||||||||||| |||||||||||    
T  4333569 tcacaatcatcttttctagcaccagagaatatagaagtagaaatctgatcaaatttaattcagactgggtaccagagatgccatctatcgtcacatgtcg 4333668  T
Q  113 cactcgaatgggcatggcccggccctgaaaagatatcttaccaacaatagg 163  Q
    |||||| |  ||||| | || ||| |||| ||||||||| |||||||||||    
T  4333669 cactcggaatggcat-gaccagccttgaagagatatcttcccaacaatagg 4333718  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 118
Target Start/End: Original strand, 6599716 - 6599757
Alignment:
Q  77 tttgataccagagatgccatctattgtcacatgtcgcactcg 118  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  6599716 tttgataccagagatgccatctattctcacatgtcgcactcg 6599757  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 3342750 - 3342696
Alignment:
Q  46 gaagtagaaaccgaataaaatctagttccgatttgataccagagatgccatctat 100  Q
    ||||||||||  | |||||||||| ||| |||||| |||||||||||||||||||    
T  3342750 gaagtagaaattggataaaatctaattcagatttggtaccagagatgccatctat 3342696  T

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Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 259
Target Start/End: Complemental strand, 20936240 - 20935994
Alignment:
Q  13 tcacaatcatcttgtctagcataggaaaatagcgaagtagaaaccgaataaaatctagttccgatttgataccagagatgccatctattgtcacatgtcg 112  Q
    ||||| ||||||| ||||||| |||| ||||  ||||||||||    |||||||||| |||| ||||| ||||| ||||||||||||| |||||||||||    
T  20936240 tcacagtcatcttttctagcacaggagaatatagaagtagaaatttgataaaatctaattccaatttgttaccaaagatgccatctatcgtcacatgtcg 20936141  T
Q  113 cactcgaatgggcatggcccggccctgaaaagatatcttaccaacaataggatgtgggagttaaaaggacagtctgctccacaaaccgtgcctacatgca 212  Q
    ||||||||||||||||| | ||| | |||||||| | || |||||||||||  |  || || ||| ||||||| ||| || ||| |  |  |||||||||    
T  20936140 cactcgaatgggcatgg-ctggcgccgaaaagattttttcccaacaataggcagcaggtgtcaaagggacagtgtgcacctcaatctctttctacatgca 20936042  T
Q  213 atcgtagcaaattcatggatc-aagggggaaaggtagcatgcataaga 259  Q
    || ||  ||||| |||||||| ||| ||||||| ||| ||||||||||    
T  20936041 attgttacaaatccatggatcaaagcgggaaagatagtatgcataaga 20935994  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 163
Target Start/End: Complemental strand, 20954475 - 20954332
Alignment:
Q  19 tcatcttgtctagcataggaaaatagcgaagtagaaaccgaataaaatctagttccgatttgataccagagatgccatctattgtcacatgtcgcactcg 118  Q
    ||||||| |||||||| ||| ||||  ||||||||||    |||||||||| |||| | ||| ||||| |||||||||| || | ||||||||||||| |    
T  20954475 tcatcttttctagcatgggagaatatagaagtagaaatttgataaaatctaattccaaattggtaccaaagatgccatcaatcgccacatgtcgcacttg 20954376  T
Q  119 aatgggcatggcccggccctgaaaagatatcttaccaacaatagg 163  Q
    ||||||||||||  |  || ||||| ||||||| |||||||||||    
T  20954375 aatgggcatggctggtgcc-gaaaatatatcttcccaacaatagg 20954332  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 60 - 164
Target Start/End: Complemental strand, 39275335 - 39275232
Alignment:
Q  60 ataaaatctagttccgatttgataccagagatgccatctattgtcacatgtcgcactcgaatgggcatggcccggccctgaaaagatatcttaccaacaa 159  Q
    |||||||||| ||| |||||||| |||| ||||||| ||||   ||||||||| ||| | |||||||||| | |||||||||||| |||||| |||||||    
T  39275335 ataaaatctaattcagatttgatgccagcgatgccacctatgcccacatgtcgaacttggatgggcatgg-ctggccctgaaaaggtatcttcccaacaa 39275237  T
Q  160 tagga 164  Q
    |||||    
T  39275236 tagga 39275232  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 230
Target Start/End: Complemental strand, 20924505 - 20924414
Alignment:
Q  139 gaaaagatatcttaccaacaataggatgtgggagttaaaaggacagtctgctccacaaaccgtgcctacatgcaatcgtagcaaattcatgg 230  Q
    ||||||||||||| |||||||||||| ||| | ||||||||| | |||| ||||  ||  |||||||||||||||| ||  |||||||||||    
T  20924505 gaaaagatatcttcccaacaataggaggtgtgtgttaaaaggtctgtctcctccttaagtcgtgcctacatgcaattgttacaaattcatgg 20924414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 232
Target Start/End: Complemental strand, 21239020 - 21238802
Alignment:
Q  13 tcacaatcatcttgtctagcataggaaaatagcgaagtagaaaccgaataaaatctagttccgatttgataccagagatgccatctattgtcacatgtcg 112  Q
    ||||| ||||||| |||| ||||||| ||| | |||||||||| |  ||||||||||  || ||||  | |||||||||    |||||||| |||||| |    
T  21239020 tcacagtcatcttttctaacataggagaattgagaagtagaaatctgataaaatctaactcagattgaaaaccagagattatgtctattgttacatgttg 21238921  T
Q  113 cactcgaatgggcatggcccggccctgaaaagatatcttaccaacaataggatgtgggagttaaaaggacagtctgctccacaaaccgtgcctacatgca 212  Q
    ||||   | ||||||| |  ||||  ||||||||||||| |||||||||||| |  || ||||| ||| ||||||||||| | | ||||||||||| |||    
T  21238920 cactttgaggggcatgtct-ggccgggaaaagatatcttcccaacaataggaggccggtgttaagaggtcagtctgctcctctatccgtgcctacaagca 21238822  T
Q  213 atcgtagcaaattcatggat 232  Q
    || ||  | |||||||||||    
T  21238821 attgttacgaattcatggat 21238802  T

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