View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19604_low_9 (Length: 350)

Name: NF19604_low_9
Description: NF19604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19604_low_9
NF19604_low_9
[»] chr3 (6 HSPs)
chr3 (92-326)||(44940075-44940309)
chr3 (88-263)||(35424632-35424807)
chr3 (100-253)||(8426441-8426594)
chr3 (88-188)||(30812171-30812271)
chr3 (88-149)||(53179352-53179413)
chr3 (209-262)||(50663712-50663765)
[»] chr2 (3 HSPs)
chr2 (88-329)||(40262144-40262385)
chr2 (88-328)||(14820332-14820575)
chr2 (209-262)||(23357523-23357576)
[»] chr1 (5 HSPs)
chr1 (88-329)||(45709059-45709299)
chr1 (88-196)||(6463971-6464079)
chr1 (102-263)||(40821105-40821266)
chr1 (88-149)||(12467737-12467798)
chr1 (211-262)||(11052422-11052473)
[»] chr4 (4 HSPs)
chr4 (88-252)||(32238766-32238929)
chr4 (88-205)||(54152321-54152438)
chr4 (98-224)||(14071806-14071934)
chr4 (272-329)||(54152209-54152266)
[»] chr6 (2 HSPs)
chr6 (88-242)||(6208708-6208862)
chr6 (90-134)||(29409741-29409785)
[»] chr8 (2 HSPs)
chr8 (88-329)||(36122204-36122447)
chr8 (174-262)||(36646814-36646902)
[»] chr5 (3 HSPs)
chr5 (88-259)||(33954556-33954727)
chr5 (100-188)||(2430946-2431034)
chr5 (88-149)||(40495880-40495941)
[»] chr7 (1 HSPs)
chr7 (88-149)||(1554278-1554339)
[»] scaffold0018 (1 HSPs)
scaffold0018 (88-140)||(193212-193264)


Alignment Details
Target: chr3 (Bit Score: 151; Significance: 8e-80; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 92 - 326
Target Start/End: Original strand, 44940075 - 44940309
Alignment:
Q  92 tattcataggaaattggggaagaaaatatgggtatattggtaactatacatatcattgtaatcaaaactgagtttcacaaaagcagaagttaggaatacc 191  Q
    |||||||| ||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  44940075 tattcataagaaattggggaagaaaacatggatatattggtaactatacatgtcattgtaatcaaaactgagtttcacaaaagcagaagctaggaatacc 44940174  T
Q  192 agcttctattgtactaacgttttgagatcaaaattgagttttctgaaagcacttttcattcactcaaacaagnnnnnnnntctgaaaaccacgtttgaaa 291  Q
    ||||||| ||||||| || |||||||||||||| ||||||| ||||||||||||||||||||| ||||||||        ||||||||||||||||||||    
T  44940175 agcttctgttgtactgactttttgagatcaaaactgagtttcctgaaagcacttttcattcacccaaacaagaaaaaaaatctgaaaaccacgtttgaaa 44940274  T
Q  292 aagtaaagtcagatttagctgctaaaaaagtgatg 326  Q
    ||||||| |||| |||||| ||| |||||||||||    
T  44940275 aagtaaactcagttttagccgctgaaaaagtgatg 44940309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 88 - 263
Target Start/End: Complemental strand, 35424807 - 35424632
Alignment:
Q  88 tgtttattcataggaaattggggaagaaaatatgggtatattggtaactatacatatcattgtaatcaaaactgagtttcacaaaagcagaagttaggaa 187  Q
    ||||||||  ||||||||||| |||||||| ||| |||||||||||||||||||| |||| | ||||||| || |||||||| || ||| ||| ||||||    
T  35424807 tgtttattactaggaaattggagaagaaaacatgagtatattggtaactatacatgtcatagaaatcaaatctcagtttcaccaacgcaaaagctaggaa 35424708  T
Q  188 taccagcttctattgtactaacgttttgagatcaaaattgagttttctgaaagcacttttcattcactcaaacaag 263  Q
    | ||  |||| | | ||| |||||||||   |||||| |||||||| ||||||  |||||||||||| ||||||||    
T  35424707 ttcctacttcaactataccaacgttttggtctcaaaactgagttttttgaaagtgcttttcattcacccaaacaag 35424632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 100 - 253
Target Start/End: Original strand, 8426441 - 8426594
Alignment:
Q  100 ggaaattggggaagaaaatatgggtatattggtaactatacatatcattgtaatcaaaactgagtttcacaaaagcagaagttaggaataccagcttcta 199  Q
    ||||||||| |||||||| |||| ||||||||||||||||||| |||||  ||||||||| ||||||||||||  |||||| ||||||| || ||||       
T  8426441 ggaaattggagaagaaaagatggatatattggtaactatacatgtcatttaaatcaaaaccgagtttcacaaactcagaagctaggaattcctgctttag 8426540  T
Q  200 ttgtactaacgttttgagatcaaaattgagttttctgaaagcacttttcattca 253  Q
     |||||   ||||||||  |||||| |||||||| || |||| |||||||||||    
T  8426541 ctgtaccggcgttttgatctcaaaactgagttttttggaagcgcttttcattca 8426594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 88 - 188
Target Start/End: Original strand, 30812171 - 30812271
Alignment:
Q  88 tgtttattcataggaaattggggaagaaaatatgggtatattggtaactatacatatcattgtaatcaaaactgagtttcacaaaagcagaagttaggaa 187  Q
    ||||||||  ||||||||||| ||||||||||| ||||| ||||||||||||||| |||| | |||||||||| ||||||||||| ||| ||| ||||||    
T  30812171 tgtttattattaggaaattggagaagaaaatataggtatgttggtaactatacatgtcatagaaatcaaaactcagtttcacaaacgcaaaagctaggaa 30812270  T
Q  188 t 188  Q
    |    
T  30812271 t 30812271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 53179413 - 53179352
Alignment:
Q  88 tgtttattcataggaaattggggaagaaaatatgggtatattggtaactatacatatcattg 149  Q
    ||||||||||| ||||||||| |||||||| |||||||||||||||||||||| | ||||||    
T  53179413 tgtttattcatgggaaattggagaagaaaacatgggtatattggtaactatacttgtcattg 53179352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 50663765 - 50663712
Alignment:
Q  209 cgttttgagatcaaaattgagttttctgaaagcacttttcattcactcaaacaa 262  Q
    ||||||||||||||||   ||||||||  ||||||||||||||||| |||||||    
T  50663765 cgttttgagatcaaaaccaagttttctataagcacttttcattcacccaaacaa 50663712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 150; Significance: 3e-79; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 88 - 329
Target Start/End: Original strand, 40262144 - 40262385
Alignment:
Q  88 tgtttattcataggaaattggggaagaaaatatgggtatattggtaactatacatatcattgtaatcaaaactgagtttcacaaaagcagaagttaggaa 187  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||    
T  40262144 tgtttattcataggaaattggggaagaaaacatgggtatattggtaactatacatgtcattgtaatcaaaactgagtttcacaaaagcagaaactaggaa 40262243  T
Q  188 taccagcttctattgtactaacgttttgagatcaaaattgagttttctgaaagcacttttcattcactcaaacaagnnnnnnnntctgaaaaccacgttt 287  Q
    ||||||||| | ||||||| ||||||||||||||||| ||||||| |||| |||||||||||||| | ||||||||        |||| |||||||||||    
T  40262244 taccagcttatgttgtactgacgttttgagatcaaaactgagtttcctgatagcacttttcattctcccaaacaagaaaaaaaatctggaaaccacgttt 40262343  T
Q  288 gaaaaagtaaagtcagatttagctgctaaaaaagtgatgcca 329  Q
    ||||||||||| |||| ||| ||| |||||||||||||||||    
T  40262344 gaaaaagtaaactcaggtttggctactaaaaaagtgatgcca 40262385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 88 - 328
Target Start/End: Complemental strand, 14820575 - 14820332
Alignment:
Q  88 tgtttattcataggaaattggggaagaaaatatgggta----tattggtaactatacatatcattgtaatcaaaactgagtttcacaaaagcagaagtta 183  Q
    ||||||||||||| |||||||||||||||| |||||||    ||||||||||||||||| ||||||||||||||| ||||||||||||||||| | | ||    
T  14820575 tgtttattcatagaaaattggggaagaaaacatgggtacgtatattggtaactatacatgtcattgtaatcaaaattgagtttcacaaaagcatatgcta 14820476  T
Q  184 ggaataccagcttctattgtactaacgttttgagatcaaaattgagttttctgaaagcacttttcattcactcaaacaagnnnnnnnntctgaaaaccac 283  Q
    |||||| |||||||| ||| |||  |||||||||||||||| ||||||| | ||||||||||||||||||| ||||||||        | || ||| |||    
T  14820475 ggaatatcagcttctgttgcactggcgttttgagatcaaaactgagtttcccgaaagcacttttcattcacccaaacaagaaaaaaatt-tggaaaacac 14820377  T
Q  284 gtttgaaaaagtaaagtcagatttagctgctaaaaaagtgatgcc 328  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  14820376 gtttgaaaaagtaaagtcaggtttggctgctaaaaaagtgatgcc 14820332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 23357576 - 23357523
Alignment:
Q  209 cgttttgagatcaaaattgagttttctgaaagcacttttcattcactcaaacaa 262  Q
    ||||||||  |||||| |||||||| || ||||||||||||||||| |||||||    
T  23357576 cgttttgatctcaaaactgagttttttggaagcacttttcattcacccaaacaa 23357523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 149; Significance: 1e-78; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 88 - 329
Target Start/End: Complemental strand, 45709299 - 45709059
Alignment:
Q  88 tgtttattcataggaaattggggaagaaaatatgggtatattggtaactatacatatcattgtaatcaaaactgagtttcacaaaagcagaagttaggaa 187  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  45709299 tgtttattcatgggaaattggggaagaaaacatgggtatattggtaactatacatgtcattgtaatcaaaactgagtttcacaaaagcagaagctaggaa 45709200  T
Q  188 taccagcttctattgtactaacgttttgagatcaaaattgagttttctgaaagcacttttcattcactcaaacaagnnnnnnnntctgaaaaccacgttt 287  Q
    ||||||||||| |||||||  | |||||||||||||| ||||||| ||||||||||||||||||||| ||||||||        |||| |||||||||||    
T  45709199 taccagcttctgttgtactggccttttgagatcaaaactgagtttcctgaaagcacttttcattcacccaaacaag-aaaaaaatctggaaaccacgttt 45709101  T
Q  288 gaaaaagtaaagtcagatttagctgctaaaaaagtgatgcca 329  Q
    ||||||||||| |||| ||| |||||| ||||||||||||||    
T  45709100 gaaaaagtaaactcagttttggctgctgaaaaagtgatgcca 45709059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 88 - 196
Target Start/End: Complemental strand, 6464079 - 6463971
Alignment:
Q  88 tgtttattcataggaaattggggaagaaaatatgggtatattggtaactatacatatcattgtaatcaaaactgagtttcacaaaagcagaagttaggaa 187  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||| ||    
T  6464079 tgtttattcataggaaattggggaagaaaacataggtatattggtaactatacatgtcattgtaatcaaaactgagtttctcaaaagcagaagctagaaa 6463980  T
Q  188 taccagctt 196  Q
    |||||||||    
T  6463979 taccagctt 6463971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 102 - 263
Target Start/End: Complemental strand, 40821266 - 40821105
Alignment:
Q  102 aaattggggaagaaaatatgggtatattggtaactatacatatcattgtaatcaaaactgagtttcacaaaagcagaagttaggaataccagcttctatt 201  Q
    ||||||| |||||||| |||||||||||||||||||||||| |||||| ||| ||||  ||||||| |||| |||  || ||||||||||||||||  ||    
T  40821266 aaattggagaagaaaacatgggtatattggtaactatacatgtcattgaaatgaaaatcgagtttcccaaacgcaatagctaggaataccagcttcagtt 40821167  T
Q  202 gtactaacgttttgagatcaaaattgagttttctgaaagcacttttcattcactcaaacaag 263  Q
    ||||   |||||||||||||||| ||||||| ||| | ||||||||||||||| ||||||||    
T  40821166 gtacacgcgttttgagatcaaaactgagtttcctggacgcacttttcattcacccaaacaag 40821105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 12467798 - 12467737
Alignment:
Q  88 tgtttattcataggaaattggggaagaaaatatgggtatattggtaactatacatatcattg 149  Q
    ||||||||||| ||||||||| |||||||| |||||||||||||||||||||| | ||||||    
T  12467798 tgtttattcatgggaaattggagaagaaaacatgggtatattggtaactatacttgtcattg 12467737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 211 - 262
Target Start/End: Original strand, 11052422 - 11052473
Alignment:
Q  211 ttttgagatcaaaattgagttttctgaaagcacttttcattcactcaaacaa 262  Q
    ||||||||||||||  |||||||||| | ||||||||||||||| |||||||    
T  11052422 ttttgagatcaaaaccgagttttctggacgcacttttcattcacccaaacaa 11052473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 88 - 252
Target Start/End: Original strand, 32238766 - 32238929
Alignment:
Q  88 tgtttattcataggaaattggggaagaaaatatgggtatattggtaactatacatatcattgtaatcaaaactgagtttcacaaaagcagaagttaggaa 187  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  32238766 tgtttattcataggaaattggg-aagaaaacatgggtatattggtaactatacatgtcattgtaatcaaaactgagtttcacaaaagcagaagctaggaa 32238864  T
Q  188 taccagcttctattgtactaacgttttgagatcaaaattgagttttctgaaagcacttttcattc 252  Q
    ||||||||||| |||||||  |||||||||||||||| |||||||||||||||||||||||||||    
T  32238865 taccagcttctgttgtactgtcgttttgagatcaaaactgagttttctgaaagcacttttcattc 32238929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 88 - 205
Target Start/End: Complemental strand, 54152438 - 54152321
Alignment:
Q  88 tgtttattcataggaaattggggaagaaaatatgggtatattggtaactatacatatcattgtaatcaaaactgagtttcacaaaagcagaagttaggaa 187  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||    
T  54152438 tgtttattcataggaaattggggaagaaaacatgggtatattggtaactatatatgtcattgtaatcaaaactgagtttcacaaaagcagaagctaggaa 54152339  T
Q  188 taccagcttctattgtac 205  Q
    ||||| ||||| ||||||    
T  54152338 taccaacttctgttgtac 54152321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 98 - 224
Target Start/End: Complemental strand, 14071934 - 14071806
Alignment:
Q  98 taggaaattggggaagaaaatatggg--tatattggtaactatacatatcattgtaatcaaaactgagtttcacaaaagcagaagttaggaataccagct 195  Q
    ||||||||||| |||||||| |||||  ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| || ||||| |||||    
T  14071934 taggaaattggagaagaaaacatgggggtatattggtaactatacatgtcattgaaatcaaaactgagtttcacaaaagcagaagctatgaatatcagct 14071835  T
Q  196 tctattgtactaacgttttgagatcaaaa 224  Q
    ||  ||||| |  ||||||||||||||||    
T  14071834 tcagttgtaatggcgttttgagatcaaaa 14071806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 329
Target Start/End: Complemental strand, 54152266 - 54152209
Alignment:
Q  272 tctgaaaaccacgtttgaaaaagtaaagtcagatttagctgctaaaaaagtgatgcca 329  Q
    |||||||||||||||| |||||||||| |||  ||| |||||| ||||||||||||||    
T  54152266 tctgaaaaccacgtttaaaaaagtaaactcaattttggctgctgaaaaagtgatgcca 54152209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 88 - 242
Target Start/End: Original strand, 6208708 - 6208862
Alignment:
Q  88 tgtttattcataggaaattggggaagaaaatatgggtatattggtaactatacatatcattgtaatcaaaactgagtttcacaaaagcagaagttaggaa 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6208708 tgtttattcataggaaattggggaagaaaatatgggtatattggtaactatacatgtcattgtaatcaaaactgagtttcacaaaagcagaagttaggaa 6208807  T
Q  188 taccagcttctattgtactaacgttttgagatcaaaattgagttttctgaaagca 242  Q
    ||||||||||| |||||||  | |||||||||||||| ||||||| |||||||||    
T  6208808 taccagcttctgttgtactggctttttgagatcaaaactgagtttcctgaaagca 6208862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 134
Target Start/End: Original strand, 29409741 - 29409785
Alignment:
Q  90 tttattcataggaaattggggaagaaaatatgggtatattggtaa 134  Q
    ||||||||||||||||||  ||| |||| ||||||||||||||||    
T  29409741 tttattcataggaaattgtagaataaaacatgggtatattggtaa 29409785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 88 - 329
Target Start/End: Original strand, 36122204 - 36122447
Alignment:
Q  88 tgtttattcataggaaattggggaagaaaatatgggtatattggtaactatacatatcattgtaatcaaaactgagtttcacaaaagcagaagttaggaa 187  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||    
T  36122204 tgtttattcataagaaattggggaagaaaacatgggtatattggtaactatacatgtcattgtaatcaaaattgagtttcacaaaagcagaagttaagaa 36122303  T
Q  188 taccagcttctattgtactaacgttttgagatcaaaattgagttttctgaaagcacttttcattcactcaaac--aagnnnnnnnntctgaaaaccacgt 285  Q
    ||||||||||| ||||| |  |||||||||||||||| ||||||| |||||||||||||| |||||| |||||  ||         |||| |||||||||    
T  36122304 taccagcttctgttgtattggcgttttgagatcaaaactgagtttcctgaaagcactttttattcacccaaacaaaaaaaaaaaaatctggaaaccacgt 36122403  T
Q  286 ttgaaaaagtaaagtcagatttagctgctaaaaaagtgatgcca 329  Q
    |||||||||| || |||  ||| ||| |||||||||||||||||    
T  36122404 ttgaaaaagtgaactcacgtttcgcttctaaaaaagtgatgcca 36122447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 262
Target Start/End: Complemental strand, 36646902 - 36646814
Alignment:
Q  174 gcagaagttaggaataccagcttctattgtactaacgttttgagatcaaaattgagttttctgaaagcacttttcattcactcaaacaa 262  Q
    ||||||| |||||||||||||||| |    |||| |||||||   |||||| ||||||||||| | || |||||||||||| |||||||    
T  36646902 gcagaagctaggaataccagcttcaacacaactagcgttttggtctcaaaactgagttttctggacgcgcttttcattcacccaaacaa 36646814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 88 - 259
Target Start/End: Original strand, 33954556 - 33954727
Alignment:
Q  88 tgtttattcataggaaattggggaagaaaatatgggtatattggtaactatacatatcattgtaatcaaaactgagtttcacaaaagcagaagttaggaa 187  Q
    ||||||||  ||||||||||  |||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| || | |    
T  33954556 tgtttattagtaggaaattgaagaagaaaacatgggtatattggtaactatacatgtcattgaaatcaaaactgagtttcacaaaagcagaagctatgga 33954655  T
Q  188 taccagcttctattgtactaacgttttgagatcaaaattgagttttctgaaagcacttttcattcactcaaa 259  Q
    || |||||||  ||||| |   |||||||||||||||    |||| ||| ||| ||||||||||||| ||||    
T  33954656 tatcagcttcagttgtaatggtgttttgagatcaaaaccacgtttcctggaagtacttttcattcacccaaa 33954727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 100 - 188
Target Start/End: Original strand, 2430946 - 2431034
Alignment:
Q  100 ggaaattggggaagaaaatatgggtatattggtaactatacatatcattgtaatcaaaactgagtttcacaaaagcagaagttaggaat 188  Q
    ||||||||| |||||||| ||||||||||||||||||||| || |||||  ||||||||| ||||||||||||  |||||| |||||||    
T  2430946 ggaaattggagaagaaaagatgggtatattggtaactatagatgtcatttaaatcaaaaccgagtttcacaaactcagaagctaggaat 2431034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 88 - 149
Target Start/End: Original strand, 40495880 - 40495941
Alignment:
Q  88 tgtttattcataggaaattggggaagaaaatatgggtatattggtaactatacatatcattg 149  Q
    ||||||||||| ||||||||| |||||||| |||||||||||||||||||||| | ||||||    
T  40495880 tgtttattcatgggaaattggagaagaaaacatgggtatattggtaactatacttgtcattg 40495941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 1554339 - 1554278
Alignment:
Q  88 tgtttattcataggaaattggggaagaaaatatgggtatattggtaactatacatatcattg 149  Q
    |||| |||||||| ||||||| |||||||| |||||||||||||||||||||| | ||||||    
T  1554339 tgttaattcatagaaaattggagaagaaaacatgggtatattggtaactatacttttcattg 1554278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 193264 - 193212
Alignment:
Q  88 tgtttattcataggaaattggggaagaaaatatgggtatattggtaactatac 140  Q
    ||||||||||| ||||||||| |||||||| |||||||||||||||| |||||    
T  193264 tgtttattcatgggaaattggagaagaaaacatgggtatattggtaattatac 193212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University