View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19605_high_2 (Length: 402)
Name: NF19605_high_2
Description: NF19605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19605_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 373
Target Start/End: Complemental strand, 3094365 - 3094010
Alignment:
| Q |
18 |
tggacatcatcaaccttataatcactatcaacaaccctaccaacttgacaaccaccatgataatgccatatagtcatcacagtgtctctacaaaattgtt |
117 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3094365 |
tggacaccagcaaccttataatcactatcaacaaccctaccaacttgacaaccaccatgataatgccatatagtcatcacagtgtctctacaaaattgtt |
3094266 |
T |
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| Q |
118 |
ccaaagacattgaagtatttgtgtgtttaggcaataaatttactggtgaatttgctgtcatgctaagtagcatagaaactgacatgtttgtgtacttaag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
3094265 |
ccaaagacattgaagtatttgtgtgtttaggcaataaatttactggtgaatttgctgtcatgttaagtagcatagaaactgacatgtttgtgtatttaaa |
3094166 |
T |
|
| Q |
218 |
tggagaaaatgcctttgaatctattattttctcaattgtgttcatgccttgtatgcatctttctaagtctcttgggtcttggaagtagttaaatgttacc |
317 |
Q |
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| T |
3094165 |
tggagaaaatgcctttgaatctattattttctcaattgtgttcatgccttgtatgcatctttctaagtctcttgggtcttggaagtagttaaatgttacc |
3094066 |
T |
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| Q |
318 |
aaagggttctcatttggatcggtgtttcggagctccaaatgacccgttgaaattgg |
373 |
Q |
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| T |
3094065 |
aaagggttctcatttggatcggtgtttcggagctccaaatgacccgttgaaattgg |
3094010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 29 - 373
Target Start/End: Complemental strand, 3085508 - 3085164
Alignment:
| Q |
29 |
aaccttataatcactatcaacaaccctaccaacttgacaaccaccatgataatgccatatagtcatcacagtgtctctacaaaattgttccaaagacatt |
128 |
Q |
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| T |
3085508 |
aaccttataatcattatcaacaaccctaccaacttgacaaccaccatgataatgccatattgtcatcacagtgtctctacaaaattgttccaaagacatt |
3085409 |
T |
|
| Q |
129 |
gaagtatttgtgtgtttaggcaataaatttactggtgaatttgctgtcatgctaagtagcatagaaactgacatgtttgtgtacttaagtggagaaaatg |
228 |
Q |
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|||||||||||||| |||||||||||||||||| ||| |||||| ||||| |||||| |||||||| ||| ||||| |||| ||| ||||| ||| | |
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| T |
3085408 |
gaagtatttgtgtgcttaggcaataaatttacttgtgcatttgcaatcatgttaagtaacatagaaaatgatatgttattgtatctaaatggagcaaaag |
3085309 |
T |
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| Q |
229 |
cctttgaatctattattttctcaattgtgttcatgccttgtatgcatctttctaagtctcttgggtcttggaagtagttaaatgttaccaaagggttctc |
328 |
Q |
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| T |
3085308 |
catttgaatctattattttctcaattgtgcccatgccttgtatgcatcgttccaagtctcttgggtcctggaagtagttaaatgttaccaaagggttatc |
3085209 |
T |
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| Q |
329 |
atttggatcggtgtttcggagctccaaatgacccgttgaaattgg |
373 |
Q |
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||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
3085208 |
atttggatcagtgtttcggagctccaaatgacctgttgaaattgg |
3085164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 69 - 118
Target Start/End: Original strand, 42960045 - 42960094
Alignment:
| Q |
69 |
ccaccatgataatgccatatagtcatcacagtgtctctacaaaattgttc |
118 |
Q |
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||||||||||| ||||| ||||| |||||||||||||||||||| ||||| |
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| T |
42960045 |
ccaccatgatagtgccaaatagtgatcacagtgtctctacaaaactgttc |
42960094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 404934 - 404890
Alignment:
| Q |
47 |
aacaaccctaccaacttgacaaccaccatgataatgccatatagt |
91 |
Q |
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| T |
404934 |
aacaaccctaccaacaacacatccaccatgataatgccatatagt |
404890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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