View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19605_high_7 (Length: 337)
Name: NF19605_high_7
Description: NF19605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19605_high_7 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 95 - 337
Target Start/End: Complemental strand, 32849393 - 32849151
Alignment:
| Q |
95 |
gttttgtactaattactacttgatgttctagtacaaacagtggctgcttgctgaaccccatgatctacattttcaagaatttcgcaatctggttcgccta |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32849393 |
gttttgtactaattactacttgatgttctagtacaaacagtggctgcttgctgaaccccatgatctacattttcaagaatttcgcaatttggttcgccta |
32849294 |
T |
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| Q |
195 |
gagctcattcttccctggtttagattcaattctttgctcaacttgcttcaagaatgtcctatgcttcaagttctcatgattcaaaaggacaaggttagtt |
294 |
Q |
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||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32849293 |
gagctcattcttccctggtttagattcaattatctgctcaacttgcttcaagaatgtcctatgcttcaagttctcatgattcaaaagaacaaggttagtt |
32849194 |
T |
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| Q |
295 |
taatccaaccttaatctggtctatatagatttgatgtgaaatt |
337 |
Q |
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| T |
32849193 |
taatccaaccttaatctggtctatatagatttgatgtgaaatt |
32849151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 96 - 337
Target Start/End: Original strand, 17478275 - 17478515
Alignment:
| Q |
96 |
ttttgtactaattactacttgatgttctagtacaaacagtggctgcttgctgaaccccatgatctacattttcaagaatttcgcaatctggttcgcctag |
195 |
Q |
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|||||||||||||| || ||| ||| || |||||||||||||||||||| ||||||||| |||||| |||||||||||||| | || || | || |||| |
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| T |
17478275 |
ttttgtactaattagtagttggtgt-cttgtacaaacagtggctgcttggtgaaccccacaatctactttttcaagaatttcactatttgatacgtctag |
17478373 |
T |
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| Q |
196 |
agctcattcttccctggtttagattcaattctttgctcaacttgcttcaagaatgtcctatgcttcaagttctcatgattcaaaaggacaaggttagttt |
295 |
Q |
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| T |
17478374 |
agctcattcttctctggtttaactccaattctctgctcagcttgcttcagaaatgtccgatgctgcaagttcttataattcagaacgacaaggtttgtat |
17478473 |
T |
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| Q |
296 |
aatccaaccttaatctggtctatatagatttgatgtgaaatt |
337 |
Q |
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| T |
17478474 |
aatcgaagcttaatctgctctatctaattttgatgtgaaatt |
17478515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 95 - 295
Target Start/End: Complemental strand, 4427437 - 4427238
Alignment:
| Q |
95 |
gttttgtactaattactacttgatgttctagtacaaacagtggctgcttgctgaaccccatgatctacattttcaagaatttcgcaatctggttcgccta |
194 |
Q |
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| T |
4427437 |
gttttgtactaattactatttgatgtcat-gttcaaatagtggctgcttggagagccccatgatctaaattttcaagaactttgctatttgtttcgccta |
4427339 |
T |
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| Q |
195 |
gagctcattcttccctggtttagattcaattctttgctcaacttgcttcaagaatgtcctatgcttcaagttctcatgattcaaaaggacaaggttagtt |
294 |
Q |
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| T |
4427338 |
gaactcactctttgtcggtgcaacatcaattctgtactgaacttgcttcaaaagtgtcctatgcttcaagttctcataattcataacgacaaggtttgtt |
4427239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 95 - 270
Target Start/End: Original strand, 4441971 - 4442145
Alignment:
| Q |
95 |
gttttgtactaattactacttgatgttctagtacaaacagtggctgcttgctgaaccccatgatctacattttcaagaatttcgcaatctggttcgccta |
194 |
Q |
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|||||||||||||| ||||||||| | | | || ||||||||||||||| |||||| | ||||||| |||||||||||||||| || || ||| || |
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| T |
4441971 |
gttttgtactaattgctacttgataatgtgg-acgaacagtggctgcttggtgaacctcgtgatctattttttcaagaatttcgctatttgcttcattta |
4442069 |
T |
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| Q |
195 |
gagctcattcttccctggtttagattcaattctttgctcaacttgcttcaagaatgtcctatgcttcaagttctca |
270 |
Q |
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| T |
4442070 |
gagctcattcttccctggtttaactccaattatctgctttccttgcttcaaaaatgtcctgtgctacaagttctca |
4442145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 130 - 268
Target Start/End: Complemental strand, 8382741 - 8382603
Alignment:
| Q |
130 |
aacagtggctgcttgctgaaccccatgatctacattttcaagaatttcgcaatctggttcgcctagagctcattcttccctggtttagattcaattcttt |
229 |
Q |
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||||||||||||||| |||||||| |||||||| ||||||||||||| ||||| || ||| |||| |||| ||||||||||||||| | ||||||| | |
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| T |
8382741 |
aacagtggctgcttggtgaaccccgtgatctactttttcaagaattttgcaatttgcttcatttagatctcactcttccctggtttagctccaattctct |
8382642 |
T |
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| Q |
230 |
gctcaacttgcttcaagaatgtcctatgcttcaagttct |
268 |
Q |
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|||| ||||||||| |||||||||| |||| |||||| |
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| T |
8382641 |
cctcagcttgcttcacaaatgtcctattcttcgagttct |
8382603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 130 - 309
Target Start/End: Complemental strand, 8366738 - 8366559
Alignment:
| Q |
130 |
aacagtggctgcttgctgaaccccatgatctacattttcaagaatttcgcaatctggttcgcctagagctcattcttccctggtttagattcaattcttt |
229 |
Q |
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||||||||||||||| |||||||| |||||||| ||||||||| ||| || ||||| ||| |||| ||||||||||||||||| | ||||||| | |
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| T |
8366738 |
aacagtggctgcttggtgaaccccgtgatctactttttcaagatttttgctatctgcttcatttagatatcattcttccctggtttgactccaattctct |
8366639 |
T |
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| Q |
230 |
gctcaacttgcttcaagaatgtcctatgcttcaagttctcatgattcaaaaggacaaggttagtttaatccaaccttaat |
309 |
Q |
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| T |
8366638 |
tctcagcttgcttcacaaatgtcctattcttcaggttcttaaaattcaaaattataaggtatgtttaatcaaagcttaat |
8366559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 95 - 318
Target Start/End: Original strand, 8341327 - 8341550
Alignment:
| Q |
95 |
gttttgtactaattactacttgatgttctagtacaaacagtggctgcttgctgaaccccatgatctacattttcaagaatttcgcaatctggttcgccta |
194 |
Q |
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|||||||||||||||||||||||| | | |||||||||||||||||| | |||||||||||| | | |||||||||||||| || || ||||||| |
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| T |
8341327 |
gttttgtactaattactacttgatatcgt-gtacaaacagtggctgctaggtgaaccccatgagatgctttttcaagaatttcaatatttgattcgcctt |
8341425 |
T |
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| Q |
195 |
gagctcattcttccctggtttagattcaattctttgctcaacttgcttcaagaatgtcctatgcttcaagttctcatgattcaaaaggacaagg-ttagt |
293 |
Q |
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|||||| ||||| ||||||||| | |||||| | ||| ||||| |||| ||||||| |||| ||| |||||| ||||| || ||||||| || | |
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| T |
8341426 |
gagctcgttctttcctggtttaactcaaattctcttctccacttgattcagaaatgtcccttgctccaacctctcataattcagaatgacaaggtttcat |
8341525 |
T |
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| Q |
294 |
ttaatccaaccttaatctggtctat |
318 |
Q |
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||||||||| |||||| |||||||| |
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| T |
8341526 |
ttaatccaagcttaatttggtctat |
8341550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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