View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19606_high_4 (Length: 346)
Name: NF19606_high_4
Description: NF19606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19606_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 4 - 331
Target Start/End: Original strand, 41860472 - 41860799
Alignment:
| Q |
4 |
agacacagtcacatcaatttaatcaaccaccacggtataaattatcaccgcgagggccttcttgcaacaaccaccacagcataaacctcgttctagaata |
103 |
Q |
| |
|
|||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
41860472 |
agacacagtcacatcagtataatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaata |
41860571 |
T |
|
| Q |
104 |
taacaaacnnnnnnngagatgataataaattaaatagcaatgcaattcaaaaattcttcggattacaaataaccaaaaatcaaactaaacaaatgctcct |
203 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41860572 |
taacaaacaaaaaaagagatgataataaattagatagcaatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcct |
41860671 |
T |
|
| Q |
204 |
actcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaag |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41860672 |
actcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaag |
41860771 |
T |
|
| Q |
304 |
cctaaaaagctattgcaagctattttgt |
331 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
41860772 |
cctaaaaagctattgcaagctattttgt |
41860799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 4 - 331
Target Start/End: Complemental strand, 52681858 - 52681531
Alignment:
| Q |
4 |
agacacagtcacatcaatttaatcaaccaccacggtataaattatcaccgcgagggccttcttgcaacaaccaccacagcataaacctcgttctagaata |
103 |
Q |
| |
|
|||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||| |
|
|
| T |
52681858 |
agacacagtcacatcagtataatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaatctccttctagaata |
52681759 |
T |
|
| Q |
104 |
taacaaacnnnnnnngagatgataataaattaaatagcaatgcaattcaaaaattcttcggattacaaataaccaaaaatcaaactaaacaaatgctcct |
203 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
52681758 |
taacaaacaaaaaaagagatgataataaattagatagcaatccaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcat |
52681659 |
T |
|
| Q |
204 |
actcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaag |
303 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
52681658 |
actcttatttcaaccccgaatttgaaaattcctgaattgcaaaatcaacaaactaaaccccacaccaattatataacaattactttgattttgtaagaag |
52681559 |
T |
|
| Q |
304 |
cctaaaaagctattgcaagctattttgt |
331 |
Q |
| |
|
||||||||||| |||||||||||||||| |
|
|
| T |
52681558 |
cctaaaaagctgttgcaagctattttgt |
52681531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 119 - 262
Target Start/End: Original strand, 30576545 - 30576688
Alignment:
| Q |
119 |
gagatgataataaattaaatagcaatgcaattcaaaaattcttcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaacc |
218 |
Q |
| |
|
|||||| |||||||||| ||| ||||| |||||||||| || ||| |||||||||||| ||||||| || |||||||| |||| | |||||||||||||| |
|
|
| T |
30576545 |
gagatggtaataaattagataacaatgaaattcaaaaactcgtcgaattacaaataacaaaaaatccaattaaacaaaagctcttgctcttattccaacc |
30576644 |
T |
|
| Q |
219 |
ccgaatttgaaaattcctgaactgcaaaatcaacaaaccaaacc |
262 |
Q |
| |
|
| | |||| ||||| || |||||||||| ||||||||||||| |
|
|
| T |
30576645 |
gccattttggaaatttctctactgcaaaatgaacaaaccaaacc |
30576688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 259
Target Start/End: Original strand, 47964110 - 47964156
Alignment:
| Q |
213 |
ccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaa |
259 |
Q |
| |
|
|||||||| ||||||||||||| | ||||| |||||||||||||||| |
|
|
| T |
47964110 |
ccaacccctaatttgaaaattcataaactgtaaaatcaacaaaccaa |
47964156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 4 - 331
Target Start/End: Original strand, 14995079 - 14995406
Alignment:
| Q |
4 |
agacacagtcacatcaatttaatcaaccaccacggtataaattatcaccgcgagggccttcttgcaacaaccaccacagcataaacctcgttctagaata |
103 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
14995079 |
agacacagtcacatcagtttaatcaaccaccaccgtataaattatcaccacgagggccttcttgcaacaaccaccaccgcataaacctccttctagaata |
14995178 |
T |
|
| Q |
104 |
taacaaacnnnnnnngagatgataataaattaaatagcaatgcaattcaaaaattcttcggattacaaataaccaaaaatcaaactaaacaaatgctcct |
203 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14995179 |
taacaaacaaaaaaagagatgataataaattagatagcaatgcaattcaaacagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcct |
14995278 |
T |
|
| Q |
204 |
actcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaag |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14995279 |
actcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaag |
14995378 |
T |
|
| Q |
304 |
cctaaaaagctattgcaagctattttgt |
331 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
14995379 |
cctaaaaagctattgcaagctattttgt |
14995406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 4 - 331
Target Start/End: Complemental strand, 3590726 - 3590399
Alignment:
| Q |
4 |
agacacagtcacatcaatttaatcaaccaccacggtataaattatcaccgcgagggccttcttgcaacaaccaccacagcataaacctcgttctagaata |
103 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
3590726 |
agacacagtcacatcagtttaatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaata |
3590627 |
T |
|
| Q |
104 |
taacaaacnnnnnnngagatgataataaattaaatagcaatgcaattcaaaaattcttcggattacaaataaccaaaaatcaaactaaacaaatgctcct |
203 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3590626 |
taacaaacaaaaaaagagatgataataaattagatagcaatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcct |
3590527 |
T |
|
| Q |
204 |
actcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaag |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3590526 |
actcttattccaaccccgaatttgaaaattgctgaactgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaag |
3590427 |
T |
|
| Q |
304 |
cctaaaaagctattgcaagctattttgt |
331 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
3590426 |
tctaaaaagctattgcaagctattttgt |
3590399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 4 - 331
Target Start/End: Complemental strand, 22006105 - 22005778
Alignment:
| Q |
4 |
agacacagtcacatcaatttaatcaaccaccacggtataaattatcaccgcgagggccttcttgcaacaaccaccacagcataaacctcgttctagaata |
103 |
Q |
| |
|
|||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
22006105 |
agacacagtcacatcagtataatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaata |
22006006 |
T |
|
| Q |
104 |
taacaaacnnnnnnngagatgataataaattaaatagcaatgcaattcaaaaattcttcggattacaaataaccaaaaatcaaactaaacaaatgctcct |
203 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22006005 |
taacaaacaaaaaaagagatgataataaattagatagcaatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcct |
22005906 |
T |
|
| Q |
204 |
actcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaag |
303 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22005905 |
actcttatttcaaccccgaatttgaaaattcctgaactgcaaaatcaaaaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaag |
22005806 |
T |
|
| Q |
304 |
cctaaaaagctattgcaagctattttgt |
331 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
22005805 |
cctaaaaagctattgcaagctattttgt |
22005778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 4 - 331
Target Start/End: Complemental strand, 7892881 - 7892554
Alignment:
| Q |
4 |
agacacagtcacatcaatttaatcaaccaccacggtataaattatcaccgcgagggccttcttgcaacaaccaccacagcataaacctcgttctagaata |
103 |
Q |
| |
|
|||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
7892881 |
agacacagtcacatcagtataatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaata |
7892782 |
T |
|
| Q |
104 |
taacaaacnnnnnnngagatgataataaattaaatagcaatgcaattcaaaaattcttcggattacaaataaccaaaaatcaaactaaacaaatgctcct |
203 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
7892781 |
taacaaacaaaaaaagagatgataataaattagatagcaatccaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcat |
7892682 |
T |
|
| Q |
204 |
actcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaag |
303 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7892681 |
actcttatttcaaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaag |
7892582 |
T |
|
| Q |
304 |
cctaaaaagctattgcaagctattttgt |
331 |
Q |
| |
|
||||||||||| |||||||||||||||| |
|
|
| T |
7892581 |
cctaaaaagctgttgcaagctattttgt |
7892554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 4 - 331
Target Start/End: Original strand, 3598843 - 3599176
Alignment:
| Q |
4 |
agacacagtcacatcaatttaatcaaccaccacggtataaattatcaccgcgagggccttcttgcaacaaccaccacagcataaacctcgttctaga--- |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
3598843 |
agacacagtcacatcagtttaatcaaccaccaccgtataaattatcatcgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagatct |
3598942 |
T |
|
| Q |
101 |
---atataacaaacnnnnnnngagatgataataaattaaatagcaatgcaattcaaaaattcttcggattacaaataaccaaaaatcaaactaaacaaat |
197 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||||||||| || ||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
3598943 |
agaatataacaaacaaaaaaagagatgataataaattagatagcaatgcaattcaaaaagtcatcgaaatacaaataaccaaaaatcaaactaaacaaat |
3599042 |
T |
|
| Q |
198 |
gctcctactcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgt |
297 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3599043 |
gctcccactcttattccaaccccgaatttgaaaattcctgaactacaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgt |
3599142 |
T |
|
| Q |
298 |
aagaagcctaaaaagctattgcaagctattttgt |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
3599143 |
aagaagcctaaaaagctattgcaagctattttgt |
3599176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 257
Target Start/End: Original strand, 13604170 - 13604262
Alignment:
| Q |
164 |
gattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaacc |
257 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||| | ||||||||| |||||| ||||||||||||| | || || |||||||||||||| |
|
|
| T |
13604170 |
gattacgaataaccaaaaatcaaattaaacaaatgttattactcttatcttaacccctaatttgaaaattcat-aaatgtaaaatcaacaaacc |
13604262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 4 - 331
Target Start/End: Complemental strand, 32674397 - 32674070
Alignment:
| Q |
4 |
agacacagtcacatcaatttaatcaaccaccacggtataaattatcaccgcgagggccttcttgcaacaaccaccacagcataaacctcgttctagaata |
103 |
Q |
| |
|
|||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
32674397 |
agacacagtcacatcagtataatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaata |
32674298 |
T |
|
| Q |
104 |
taacaaacnnnnnnngagatgataataaattaaatagcaatgcaattcaaaaattcttcggattacaaataaccaaaaatcaaactaaacaaatgctcct |
203 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32674297 |
taacaaacaaaaaaagagatgataataaattagatagcaatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcct |
32674198 |
T |
|
| Q |
204 |
actcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaag |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32674197 |
actcttattccaaccccgaatttgaaaattcctgaattgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaag |
32674098 |
T |
|
| Q |
304 |
cctaaaaagctattgcaagctattttgt |
331 |
Q |
| |
|
||||||||||||||||||| |||||||| |
|
|
| T |
32674097 |
cctaaaaagctattgcaagttattttgt |
32674070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 199 - 330
Target Start/End: Original strand, 22636691 - 22636826
Alignment:
| Q |
199 |
ctcctactcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaaaccccacaccaatcatat----aacaattactttgattt |
294 |
Q |
| |
|
||||||||||| |||||||| | |||||||||| || | ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
22636691 |
ctcctactctttttccaaccaccaatttgaaaactcataaactgcaaaatcaacaaacaaaaccccacaccaatcatatgaacaacaattactttgattt |
22636790 |
T |
|
| Q |
295 |
tgtaagaagcctaaaaagctattgcaagctattttg |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
22636791 |
tgtaagaagcctaaaaagctattgcaagctattttg |
22636826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 257
Target Start/End: Complemental strand, 21122422 - 21122329
Alignment:
| Q |
164 |
gattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaacc |
257 |
Q |
| |
|
|||||| ||||||||||||| ||| |||||||||||| ||||||||| |||||| ||||| ||||||| | || | |||||||||||||| |
|
|
| T |
21122422 |
gattacgaataaccaaaaataaaattaaacaaatgctattactcttatcttaacccctaatttaaaaattcatagaccgtaaaatcaacaaacc |
21122329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 4 - 331
Target Start/End: Complemental strand, 18200874 - 18200547
Alignment:
| Q |
4 |
agacacagtcacatcaatttaatcaaccaccacggtataaattatcaccgcgagggccttcttgcaacaaccaccacagcataaacctcgttctagaata |
103 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
18200874 |
agacacagtcacatcagtttaatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaata |
18200775 |
T |
|
| Q |
104 |
taacaaacnnnnnnngagatgataataaattaaatagcaatgcaattcaaaaattcttcggattacaaataaccaaaaatcaaactaaacaaatgctcct |
203 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18200774 |
taacaaacaaaaaaagagatgataataaattagatagcaatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcct |
18200675 |
T |
|
| Q |
204 |
actcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaag |
303 |
Q |
| |
|
| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18200674 |
attcttattccaaccccaaatttgaaaattcctgaactgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaag |
18200575 |
T |
|
| Q |
304 |
cctaaaaagctattgcaagctattttgt |
331 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
18200574 |
tctaaaaagctattgcaagctattttgt |
18200547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 4 - 331
Target Start/End: Complemental strand, 26950645 - 26950318
Alignment:
| Q |
4 |
agacacagtcacatcaatttaatcaaccaccacggtataaattatcaccgcgagggccttcttgcaacaaccaccacagcataaacctcgttctagaata |
103 |
Q |
| |
|
||||| |||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
26950645 |
agacatagtcacatcagtataatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaata |
26950546 |
T |
|
| Q |
104 |
taacaaacnnnnnnngagatgataataaattaaatagcaatgcaattcaaaaattcttcggattacaaataaccaaaaatcaaactaaacaaatgctcct |
203 |
Q |
| |
|
|||||||| ||||||||||||||||| ||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26950545 |
taacaaacaaaaaaagagatgataataaattagataacaatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcct |
26950446 |
T |
|
| Q |
204 |
actcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaag |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26950445 |
actcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaag |
26950346 |
T |
|
| Q |
304 |
cctaaaaagctattgcaagctattttgt |
331 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
26950345 |
cctaaaaagctattgcaagctattttgt |
26950318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 4 - 331
Target Start/End: Original strand, 36092402 - 36092729
Alignment:
| Q |
4 |
agacacagtcacatcaatttaatcaaccaccacggtataaattatcaccgcgagggccttcttgcaacaaccaccacagcataaacctcgttctagaata |
103 |
Q |
| |
|
||||||| |||||| | | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
36092402 |
agacacaatcacattagtataatcaaccaccactgtataaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaata |
36092501 |
T |
|
| Q |
104 |
taacaaacnnnnnnngagatgataataaattaaatagcaatgcaattcaaaaattcttcggattacaaataaccaaaaatcaaactaaacaaatgctcct |
203 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36092502 |
taacaaacaaaaaaagagatgataataaattagatagcaatgcaattcaaaaagtcatcagattacaaataaccaaaaatcaaactaaacaaatgctcct |
36092601 |
T |
|
| Q |
204 |
actcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaag |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36092602 |
actcttattccaaccccgaatttgaaaattcatgaactgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaag |
36092701 |
T |
|
| Q |
304 |
cctaaaaagctattgcaagctattttgt |
331 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
36092702 |
cctaaaaagctattgcaagctattttgt |
36092729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 257
Target Start/End: Original strand, 12807577 - 12807663
Alignment:
| Q |
171 |
aataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaacc |
257 |
Q |
| |
|
||||||||||||||||| |||||||||| | ||||||||| |||||| ||||||||||||| | ||||| |||||||||||||| |
|
|
| T |
12807577 |
aataaccaaaaatcaaattaaacaaatgttattactcttatcttaacccctaatttgaaaattcataaactgtaaaatcaacaaacc |
12807663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 251
Target Start/End: Original strand, 14458470 - 14458557
Alignment:
| Q |
164 |
gattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaa |
251 |
Q |
| |
|
|||||| ||| ||||||||| ||| |||||||||||| ||||||||| ||| || ||||||||||||| | ||||| |||||||| |
|
|
| T |
14458470 |
gattacgaattaccaaaaataaaattaaacaaatgctattactcttatcttaactcctaatttgaaaattcataaactgtaaaatcaa |
14458557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 4 - 331
Target Start/End: Complemental strand, 13907387 - 13907060
Alignment:
| Q |
4 |
agacacagtcacatcaatttaatcaaccaccacggtataaattatcaccgcgagggccttcttgcaacaaccaccacagcataaacctcgttctagaata |
103 |
Q |
| |
|
||||||| |||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
13907387 |
agacacattcacatcagtataatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaata |
13907288 |
T |
|
| Q |
104 |
taacaaacnnnnnnngagatgataataaattaaatagcaatgcaattcaaaaattcttcggattacaaataaccaaaaatcaaactaaacaaatgctcct |
203 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13907287 |
taacaaacaaaaaaagagatgataataaattagatagcaatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcct |
13907188 |
T |
|
| Q |
204 |
actcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaag |
303 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13907187 |
actcttatttcaaccccgaatttgaaaattcctgaactgcaaaatcaaaaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaag |
13907088 |
T |
|
| Q |
304 |
cctaaaaagctattgcaagctattttgt |
331 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
13907087 |
cctaaaaagctattgcaagctattttgt |
13907060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 4 - 331
Target Start/End: Complemental strand, 26455032 - 26454705
Alignment:
| Q |
4 |
agacacagtcacatcaatttaatcaaccaccacggtataaattatcaccgcgagggccttcttgcaacaaccaccacagcataaacctcgttctagaata |
103 |
Q |
| |
|
|||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
26455032 |
agacacagtcacatcagtataatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaata |
26454933 |
T |
|
| Q |
104 |
taacaaacnnnnnnngagatgataataaattaaatagcaatgcaattcaaaaattcttcggattacaaataaccaaaaatcaaactaaacaaatgctcct |
203 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
26454932 |
taacaaacaaaaaaagagatgataataaattagatagcaatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcat |
26454833 |
T |
|
| Q |
204 |
actcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaag |
303 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26454832 |
actcttatttcaaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaag |
26454733 |
T |
|
| Q |
304 |
cctaaaaagctattgcaagctattttgt |
331 |
Q |
| |
|
||||||||||| |||||||||||||||| |
|
|
| T |
26454732 |
cctaaaaagctgttgcaagctattttgt |
26454705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 4 - 331
Target Start/End: Complemental strand, 40604869 - 40604542
Alignment:
| Q |
4 |
agacacagtcacatcaatttaatcaaccaccacggtataaattatcaccgcgagggccttcttgcaacaaccaccacagcataaacctcgttctagaata |
103 |
Q |
| |
|
|||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
40604869 |
agacacagtcacatcagtataatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaata |
40604770 |
T |
|
| Q |
104 |
taacaaacnnnnnnngagatgataataaattaaatagcaatgcaattcaaaaattcttcggattacaaataaccaaaaatcaaactaaacaaatgctcct |
203 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
40604769 |
taacaaacaaaaaaagagatgataataaattagatagcaatccaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcat |
40604670 |
T |
|
| Q |
204 |
actcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaag |
303 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40604669 |
actcttatttcaaccccgaatttgaaaatttctgaactgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaag |
40604570 |
T |
|
| Q |
304 |
cctaaaaagctattgcaagctattttgt |
331 |
Q |
| |
|
||||||||| | |||||||||||||||| |
|
|
| T |
40604569 |
cctaaaaagttgttgcaagctattttgt |
40604542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 4 - 331
Target Start/End: Original strand, 35595549 - 35595876
Alignment:
| Q |
4 |
agacacagtcacatcaatttaatcaaccaccacggtataaattatcaccgcgagggccttcttgcaacaaccaccacagcataaacctcgttctagaata |
103 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
35595549 |
agacacagtcacatcagtttaatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaata |
35595648 |
T |
|
| Q |
104 |
taacaaacnnnnnnngagatgataataaattaaatagcaatgcaattcaaaaattcttcggattacaaataaccaaaaatcaaactaaacaaatgctcct |
203 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35595649 |
taacaaacaaaaaaggagatgataataaattagatagcaatgcaattcaaaaagtcaacggattacaaataaccaaaaatcaaactaaacaaatgctccc |
35595748 |
T |
|
| Q |
204 |
actcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaag |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
35595749 |
actcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaaatcccacaccaatcatataacaattattttgattttgtaagaag |
35595848 |
T |
|
| Q |
304 |
cctaaaaagctattgcaagctattttgt |
331 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
35595849 |
cctaaaaagctattgcaagctattttgt |
35595876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 4 - 331
Target Start/End: Original strand, 2045848 - 2046175
Alignment:
| Q |
4 |
agacacagtcacatcaatttaatcaaccaccacggtataaattatcaccgcgagggccttcttgcaacaaccaccacagcataaacctcgttctagaata |
103 |
Q |
| |
|
|||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
2045848 |
agacacagtcacatcagtataatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaata |
2045947 |
T |
|
| Q |
104 |
taacaaacnnnnnnngagatgataataaattaaatagcaatgcaattcaaaaattcttcggattacaaataaccaaaaatcaaactaaacaaatgctcct |
203 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| ||||||||||| || |||||||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
2045948 |
taacaaacaaaaaaagagatgataataaattagatagcaatccaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaataaatgctcat |
2046047 |
T |
|
| Q |
204 |
actcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaag |
303 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2046048 |
actcttatttcaaccccgaatttgaaaattcctgaactgcaaaataaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaag |
2046147 |
T |
|
| Q |
304 |
cctaaaaagctattgcaagctattttgt |
331 |
Q |
| |
|
||||||||||| |||||||||||||||| |
|
|
| T |
2046148 |
cctaaaaagctgttgcaagctattttgt |
2046175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 130 - 197
Target Start/End: Complemental strand, 52589782 - 52589715
Alignment:
| Q |
130 |
aaattaaatagcaatgcaattcaaaaattcttcggattacaaataaccaaaaatcaaactaaacaaat |
197 |
Q |
| |
|
|||||| |||||||||||||||||||| || | |||||||||||| |||||||||| |||||||| |
|
|
| T |
52589782 |
aaattagatagcaatgcaattcaaaaactcgttacattacaaataacaaaaaatcaaatcaaacaaat |
52589715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University